EGAF00005753748 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753748
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	65572195
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	4870	0.0	10.719015	145
AGCGTCG	68230	0.0	6.51383	145
CGTCGTG	61680	0.0	6.2534347	145
TCGTGTA	60565	0.0	5.7580404	145
ATCGGAA	103095	0.0	5.668247	145
GCGTCGT	63395	0.0	5.6496725	145
GATCGGA	104210	0.0	5.642386	145
AGATCGG	107065	0.0	5.552872	145
GAGCGTC	75335	0.0	5.5525346	9
TAGATCG	39735	0.0	5.400946	145
AGAGCGT	83125	0.0	5.2855754	145
AAGAGCG	93380	0.0	5.2719007	145
TCGGAAG	101665	0.0	5.19172	145
CGGAAGA	101510	0.0	5.1782203	145
CGTGTAG	61120	0.0	5.1719522	145
GTCGTGT	62505	0.0	5.161745	145
CGCCGTA	17090	0.0	5.074266	45-49