EGAF00005753750 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753750
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	65859367
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	5315	0.0	6.8197293	145
CGTCGTG	67725	0.0	6.497407	145
GTCGTGT	67920	0.0	6.0624905	145
GAGCGTC	81975	0.0	5.8011913	9
TCGTGTA	65485	0.0	5.800826	145
CGTGTAG	65650	0.0	5.7752047	145
AGCGTCG	74240	0.0	5.7514553	145
GCGTCGT	69475	0.0	5.6450887	140-144
AGATCGG	114245	0.0	5.571315	145
GATCGGA	111020	0.0	5.465434	145
AGAGCGT	89125	0.0	5.4250607	8
TCGGAAG	108580	0.0	5.4013095	145
CGCCGTA	18260	0.0	5.3441014	45-49
AAGAGCG	99370	0.0	5.2088675	145
TAGATCG	42470	0.0	5.206166	145
ATCGGAA	109935	0.0	5.136909	145
CGGAAGA	107720	0.0	5.013723	145