EGAF00005753757 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753757
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	66859976
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	17170	0.0	6.147344	45-49
AGATCGG	108220	0.0	6.135811	145
GATCGGA	105055	0.0	5.9549494	145
ACACGTC	69105	0.0	5.8114476	145
ATCGGAA	104390	0.0	5.7220592	145
CGTATGC	20195	0.0	5.3844814	45-49
CTCGTAT	19145	0.0	5.384398	40-44
CGGAAGA	101920	0.0	5.384192	145
TCGGAAG	102275	0.0	5.365503	145
TAGATCG	41075	0.0	5.3474793	145
TGCCGTC	20450	0.0	5.2110286	50-54
GCCGTCT	20875	0.0	5.195227	50-54
GCACACG	84535	0.0	5.170884	145
ACGTCTG	68730	0.0	5.1470394	145
CGTCTGA	61910	0.0	5.140292	145
ATGCCGT	21325	0.0	5.133155	45-49
CACGTCT	73280	0.0	5.0549803	145
CACACGT	85635	0.0	5.028277	145
TCTCGTA	20425	0.0	5.004377	40-44