EGAF00005753758 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753758
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	66859976
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	5385	0.0	6.596561	145
GAGCGTC	82590	0.0	6.0565085	9
AGCGTCG	74750	0.0	5.799589	145
AGATCGG	115750	0.0	5.7933254	145
CGTCGTG	67455	0.0	5.781964	145
AGAGCGT	90470	0.0	5.6171217	8
GATCGGA	112120	0.0	5.6058726	145
GTCGTGT	68455	0.0	5.5704174	145
AAGAGCG	100910	0.0	5.524581	145
GCGTCGT	69425	0.0	5.513473	145
ATCGGAA	110865	0.0	5.4535437	145
CGCCGTA	18960	0.0	5.4523177	45-49
TCGTGTA	66200	0.0	5.2454734	145
CGTGTAG	67170	0.0	5.234481	145
TCGGAAG	108910	0.0	5.098803	145
CGGAAGA	109430	0.0	5.0480747	145