EGAF00005753895 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753895
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	86672411
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	36630	0.0	13.974613	1
TCGGAAG	39770	0.0	12.99888	2
CGGAAGA	43900	0.0	11.742947	3
TATGCCG	17525	0.0	7.5209355	45-49
CTCGTAT	17790	0.0	6.838512	40-44
CGTATGC	20510	0.0	6.695144	40-44
TCTCGTA	19255	0.0	6.3709245	40-44
AGAGCAC	92070	0.0	6.165464	7
ATGCCGT	22560	0.0	6.0287843	45-49
TGCCGTC	22655	0.0	5.9843025	45-49
AGCACAC	97945	0.0	5.980689	9
TCGTATG	20940	0.0	5.9344397	40-44
GCCGTCT	23265	0.0	5.839861	45-49
GAGCACA	100475	0.0	5.700215	8
GAAGAGC	105075	0.0	5.4782677	5
CGTCTTC	27965	0.0	5.0607347	50-54