EGAF00005753899 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753899
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	87452528
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	38140	0.0	14.338086	1
TCGGAAG	40780	0.0	13.262206	2
CGGAAGA	44985	0.0	12.16666	3
TATGCCG	17855	0.0	7.739085	45-49
CTCGTAT	18440	0.0	7.383815	40-44
TCTCGTA	19220	0.0	6.8351955	40-44
CGTATGC	20755	0.0	6.755847	40-44
ATGCCGT	22405	0.0	6.4198275	45-49
AGAGCAC	93840	0.0	6.287894	7
TCGTATG	21770	0.0	6.2277236	40-44
TGCCGTC	23265	0.0	6.151354	45-49
GCCGTCT	23845	0.0	6.1355066	45-49
AGCACAC	101195	0.0	5.9813085	9
GAAGAGC	105270	0.0	5.7910886	5
GAGCACA	103225	0.0	5.7723904	8
CGTCTTC	28230	0.0	5.2597632	50-54