EGAF00005753956 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753956
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	65952504
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	5405	0.0	9.925356	145
ACCGCGC	17690	0.0	8.0106325	1
AGCGTCG	45170	0.0	6.0827394	145
CGTGTAG	42580	0.0	6.044116	145
CGTCGTG	40975	0.0	5.9800916	145
AGATCGG	74020	0.0	5.739296	145
GCGTCGT	41630	0.0	5.7362576	140-144
GAGCGTC	52210	0.0	5.665217	145
GTCGTGT	42705	0.0	5.6529555	145
TCGTGTA	41530	0.0	5.6034203	145
GATCGGA	70450	0.0	5.515614	145
ATCGGAA	70330	0.0	5.4219465	145
AGAGCGT	58540	0.0	5.4117637	145
TCGGAAG	70710	0.0	5.4030604	145
CGGAAGA	71475	0.0	5.2742324	145
CGCGATC	10485	0.0	5.2566457	3
GCGCGAT	10370	0.0	5.1751676	2
CCGCGCC	28435	0.0	5.075412	2