EGAF00005753960 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753960
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	66381302
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	5300	0.0	8.616759	145
ACCGCGC	17425	0.0	8.248967	1
AGCGTCG	45310	0.0	5.983521	145
GAGCGTC	52400	0.0	5.8656187	145
TCGTGTA	40935	0.0	5.7907157	145
CGTCGTG	40780	0.0	5.7771735	145
GCGTCGT	41705	0.0	5.718565	145
AGATCGG	73475	0.0	5.633467	145
GTCGTGT	42455	0.0	5.6004677	145
TCGGAAG	70790	0.0	5.4580135	145
GATCGGA	69630	0.0	5.4344225	145
ATCGGAA	69695	0.0	5.429354	145
CGTGTAG	42115	0.0	5.4047065	145
CGCGATC	10885	0.0	5.3966107	3
TAGATCG	28340	0.0	5.243645	145
CCGCGCC	28600	0.0	5.17365	2
AAGAGCG	66855	0.0	5.128691	145
CTCACGC	54240	0.0	5.0139046	3
CGGAAGA	71610	0.0	5.0108433	145