EGAF00005753990 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753990
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	60652067
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	4030	0.0	7.19705	145
ACCGCGC	15860	0.0	6.9451547	1
CGTCGTG	34600	0.0	6.6851964	145
AGCGTCG	38045	0.0	6.556324	145
TAGATCG	24250	0.0	6.189537	145
TCGTGTA	35390	0.0	6.085208	145
GCGTCGT	35205	0.0	6.082915	140-144
GTCGTGT	36620	0.0	5.9798207	145
GAGCGTC	44410	0.0	5.975852	145
AGATCGG	63160	0.0	5.969814	145
CGTGTAG	35850	0.0	5.8250933	145
ATCGGAA	60020	0.0	5.617674	145
GATCGGA	59575	0.0	5.5622654	145
CGGAAGA	61065	0.0	5.2128077	145
GTCGCCG	10150	0.0	5.143586	145
AGAGCGT	49960	0.0	5.1378384	145
AAGAGCG	56910	0.0	5.1219697	145
TCGGAAG	60240	0.0	5.055497	145