EGAF00005753992 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753992
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	61528231
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	3965	0.0	8.593907	145
AGCGTCG	36600	0.0	6.6160893	145
CGCGATC	10255	0.0	6.5753136	3
ACCGCGC	15855	0.0	6.4901295	1
CGTGTAG	34515	0.0	6.3645945	145
GTCGTGT	35305	0.0	6.3043184	145
GCGCGAT	10380	0.0	6.2867928	2
GATCGGA	58240	0.0	6.1495247	145
CGTCGTG	33225	0.0	6.13165	145
GCGTCGT	33885	0.0	6.055011	145
GAGCGTC	43130	0.0	6.001015	145
TCGTGTA	34210	0.0	5.912717	145
ATCGGAA	58350	0.0	5.740333	145
AGATCGG	61585	0.0	5.7331066	145
TCGGAAG	58790	0.0	5.549388	145
AGAGCGT	48180	0.0	5.4923987	145
TAGATCG	23870	0.0	5.406343	145
AAGAGCG	56040	0.0	5.148977	145
GGCGCGA	12775	0.0	5.120598	1