EGAF00005753994 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753994
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	62860976
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	4325	0.0	8.892511	145
CGTCGTG	36075	0.0	6.959923	145
AGCGTCG	39995	0.0	6.3503404	145
TCGTGTA	36990	0.0	6.120754	145
GCGTCGT	36860	0.0	6.033775	140-144
ACCGCGC	16615	0.0	5.8924294	1
TAGATCG	24775	0.0	5.828732	145
GATCGGA	61920	0.0	5.719045	145
GAGCGTC	46460	0.0	5.622869	145
ATCGGAA	62615	0.0	5.5744414	145
GTCGTGT	37880	0.0	5.536337	145
CGTGTAG	37545	0.0	5.5084248	145
AGATCGG	65380	0.0	5.5051785	145
AAGAGCG	59405	0.0	5.423687	145
TCGGAAG	62790	0.0	5.3046517	145
CGGAAGA	63805	0.0	5.2543855	145
AGAGCGT	52165	0.0	5.1192136	145
CTCACGC	49335	0.0	5.0850444	3
CGCGATC	10420	0.0	5.079593	3