EGAF00005754027 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005754027
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	55608172
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATAGA	19545	0.0	6.342222	145
ACGATAG	20370	0.0	6.2277055	145
ACACGTC	49480	0.0	6.03599	145
CACGTCT	53600	0.0	5.9777613	145
ATCGGAA	74250	0.0	5.857817	145
GTCACGA	23915	0.0	5.819851	145
GATCGGA	74875	0.0	5.8186026	145
AGATCGG	77970	0.0	5.7735786	145
AGTCACG	28325	0.0	5.579145	145
TCGGAAG	73520	0.0	5.5511622	145
TAGATCG	29920	0.0	5.524008	145
GCACACG	62865	0.0	5.4772897	145
TCACGAT	25715	0.0	5.4688525	145
ACGTCTG	49495	0.0	5.37509	145
CACGATA	23005	0.0	5.3253174	145
CGTCTGA	44250	0.0	5.307778	145
TATGCCG	10665	0.0	5.111486	45-49
CGGAAGA	72975	0.0	5.025153	140-144