EGAF00005754035 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005754035
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	68831408
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTGA	81340	0.0	6.3543887	145
ACACGTC	91345	0.0	6.158364	145
ACGTCTG	89795	0.0	6.103206	145
TATGCCG	19120	0.0	5.9146323	45-49
CACGTCT	95085	0.0	5.6645474	145
CACACGT	109810	0.0	5.6245284	145
GATCGGA	142530	0.0	5.59976	145
CTCGTAT	22765	0.0	5.4133945	145
TCGGAAG	137045	0.0	5.3583946	145
GCACACG	112610	0.0	5.3173037	145
TCTCGTA	24050	0.0	5.2748656	145
ATCGGAA	139835	0.0	5.2722197	145
AGATCGG	146235	0.0	5.2001104	145
CGGAAGA	136600	0.0	5.195417	145
TAGATCG	53360	0.0	5.135283	145
GCCGTCT	22715	0.0	5.132163	50-54
CGTATGC	22775	0.0	5.099119	45-49