EGAF00005754041 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005754041
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	68085192
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTGA	80050	0.0	6.0490217	145
TATGCCG	19045	0.0	6.021401	45-49
ACACGTC	89915	0.0	5.981936	145
ACGTCTG	88110	0.0	5.9234858	145
AGATCGG	143225	0.0	5.5571685	145
TCGGAAG	134700	0.0	5.4944997	145
GATCGGA	138945	0.0	5.436192	145
CGGAAGA	133545	0.0	5.3466115	145
GCACACG	109955	0.0	5.3004293	145
GCCGTCT	22975	0.0	5.231242	50-54
TAGATCG	51680	0.0	5.217837	145
TGCCGTC	22830	0.0	5.200964	50-54
CGTATGC	22630	0.0	5.1892257	45-49
CACGTCT	93945	0.0	5.146621	145
ATCGGAA	136635	0.0	5.130203	145
ATGCCGT	23250	0.0	5.113202	45-49
CACACGT	108180	0.0	5.112668	145
CTCGTAT	21885	0.0	5.1008425	40-44