EGAF00005754044 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005754044
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	68112553
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	7830	0.0	17.962225	145
CGTCGTG	86115	0.0	6.036157	145
AGCGTCG	95075	0.0	5.8028116	145
GTCGTGT	86465	0.0	5.626034	145
GCGTCGT	87995	0.0	5.5066175	140-144
CGTGTAG	82405	0.0	5.4985304	145
TAGATCG	52825	0.0	5.4895997	145
CGCCGTA	19735	0.0	5.444558	45-49
AGATCGG	147075	0.0	5.4369683	145
GAGCGTC	104190	0.0	5.406487	145
TCGTGTA	81930	0.0	5.353436	145
ATCGGAA	140645	0.0	5.293785	145
AAGAGCG	125935	0.0	5.232842	145
CGGAAGA	137750	0.0	5.1366315	145
TCGGAAG	138610	0.0	5.0472283	145
GATCGGA	142895	0.0	5.0277863	145
AGAGCGT	112500	0.0	5.001815	140-144