EGAF00005754060 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005754060
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	54768097
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	6130	0.0	13.836836	145
AGCGTCG	52120	0.0	6.356576	145
CGTGTAG	46470	0.0	6.224602	145
CGTCGTG	46835	0.0	6.005824	145
GCGTCGT	47575	0.0	5.753767	140-144
ATCGGAA	77810	0.0	5.552931	145
TCGTGTA	45640	0.0	5.495939	145
AAGAGCG	72635	0.0	5.4694796	145
GTCGTGT	47690	0.0	5.3446674	140-144
AGATCGG	82060	0.0	5.3360124	145
GATCGGA	78825	0.0	5.3342757	145
TAGATCG	29780	0.0	5.2582407	145
GTCGCCG	14145	0.0	5.125172	145
GAGCGTC	58575	0.0	5.1187906	140-144
TCGGAAG	77730	0.0	5.073663	145
CGGAAGA	78355	0.0	5.023941	145