FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005754084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005754084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57819041
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGAT101800.011.6802742
CGCGATC101900.011.6672673
CTCACGC523300.010.3206013
GCTCACG531900.010.1550772
ACCGCGC175650.09.5141311
GGCGCGA131650.09.4091021
GCGTCGG55350.09.168865145
GCGATCT217500.08.3659244
CACGCCT700750.08.1519855
TCACGCC678500.08.0987664
ACGCCTG684550.07.8258386
CGCCTGT745900.07.70697937
CGCAATC106900.06.7136233
ACCGCAC179400.06.6595911
ACCGTGC195000.06.6154661
GGCTCAC1660250.06.48089461
CGTCGTG386100.06.440647145
CGATCTT141200.06.36630255
TGCGATC132900.06.27295733
AGCGTCG423750.06.210579145
Produced by FastQC (version 0.11.5)