EGAF00005754100 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005754100
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	48241412
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	4470	0.0	11.353466	145
AGCGTCG	42300	0.0	6.1359334	145
AGATCGG	68530	0.0	6.0196257	145
CGTCGTG	38210	0.0	5.9199157	145
CGTGTAG	38085	0.0	5.8441634	145
GAGCGTC	47920	0.0	5.7945523	145
GTCGTGT	39270	0.0	5.7601213	145
GCGTCGT	38875	0.0	5.7067513	145
TCGTGTA	37475	0.0	5.6104064	145
GATCGGA	64990	0.0	5.5777802	145
ATCGGAA	64870	0.0	5.5545697	145
TCGGAAG	64390	0.0	5.337008	145
TAGATCG	25325	0.0	5.3247776	145
AAGAGCG	59785	0.0	5.2872787	145
CGGAAGA	64855	0.0	5.119882	145
AGAGCGT	53010	0.0	5.016442	140-144