FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005754149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005754149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences360712404
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1360950.028.8619121
TCGGAAG1479650.026.5947342
CGGAAGA1651800.023.8757083
TATGCCG663450.012.23691745-49
AGAGCAC3696950.011.2539067
CTCGTAT752550.010.83271940-44
TAATGCG763000.010.65063930-34
AGCACAC3945100.010.6305589
GCGCATC565600.010.44224735-39
GAGCACA4073850.010.2607778
CGTATGC792800.010.18735145-49
GAAGAGC4138450.010.16192155
AATGCGC798700.010.12374430-34
ATGCGCA852900.09.35430235-39
TCGTATG875600.09.33355840-44
ATGCCGT847300.09.29078545-49
TCTCGTA666550.09.18692940-44
TGCCGTC859350.09.01708345-49
GCCGTCT872150.08.70659250-54
TGCGCAT708800.08.53511835-39
Produced by FastQC (version 0.11.5)