EGAF00005754153 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005754153
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	430477996
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCGCG	25425	0.0	13.772004	20-24
TGGCCCG	97425	0.0	13.126645	5
ATCGCGG	33750	0.0	10.602318	20-24
CCGGGGG	139215	0.0	9.389	9
GGCCCGG	150255	0.0	8.819562	6
TCGCGGC	45380	0.0	8.076617	20-24
GCCCGGG	169965	0.0	7.9799047	7
CCCGGGG	168740	0.0	7.8534036	8
GTATGGC	180240	0.0	7.533023	2
GGATCCG	47585	0.0	7.07246	4
GATCCGT	45355	0.0	6.702843	1
TATGGCC	246715	0.0	5.8289447	3
GTACTGG	255790	0.0	5.7982016	1
TTCGCGA	15855	0.0	5.6662736	30-34
ATGGCCC	256435	0.0	5.5797787	4
GTTCGCG	18860	0.0	5.10919	30-34
AGTATGG	300635	0.0	5.046458	1