EGAF00005754168 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005754168
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	475552748
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCGCG	30205	0.0	11.491388	20-24
TGGCCCG	111625	0.0	9.845408	5
GATCCGT	51925	0.0	9.354303	1
ATCGCGG	45075	0.0	7.906301	20-24
ACCGCGC	113130	0.0	6.850355	1
TCGCGGC	54070	0.0	6.79213	20-24
GGATCCG	55425	0.0	6.6705317	4
GGCCCGG	184460	0.0	6.17798	6
GTATGGC	196645	0.0	6.1306334	2
GCCCGGG	208895	0.0	5.62537	7
CCGTTAG	48095	0.0	5.411162	4
CCGGGGG	208710	0.0	5.3212256	9
CCCGGGG	217670	0.0	5.29535	8
CGTTAGC	49855	0.0	5.292839	5
CCGTATA	54445	0.0	5.2061267	4
ATCCGTA	57290	0.0	5.1627054	2
CGTATAC	57930	0.0	5.018071	5