FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005754183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005754183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374130727
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1321000.042.0808451
TCGGAAG1434000.038.675552
CGGAAGA1639300.033.8054963
AGAGCAC3787200.015.2055897
AGCACAC4032450.014.3041119
GAGCACA4140050.014.0057038
GAAGAGC4243100.013.5752335
TATGCCG850500.013.08930545-49
CTCGTAT914100.012.02840340-44
CGTATGC973650.011.44265945-49
AGCGATA1019750.011.147799530-34
CGATAGA987600.011.14320935-39
GGATCCG399000.010.8553594
GCGATAG1032800.010.74343630-34
ACCGCGC958900.010.2024831
TATCGCG208000.010.03726320-24
TGCCGTC1011700.010.01860345-49
TCTCGTA780350.010.0144740-44
TCGTATG1102800.010.00699540-44
ATGCCGT1047100.09.98286945-49
Produced by FastQC (version 0.11.5)