FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005754239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005754239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477330850
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATCCG480250.011.7173724
TATCGCG191650.011.4897930-34
TGGCCCG971350.011.2668515
ATCGGAA1546150.09.74173451
ACCGCGC1198850.08.9855841
TCGGAAG1690400.08.9108332
ATCGCGG260300.08.68787530-34
GATCCGT462250.08.1061565
CCGGGGG1356950.08.0545679
CGGAAGA1925650.07.94283533
GGCCCGG1472600.07.57454976
CTAGTAC1652100.07.33068949
GCCCGGG1746500.06.702047
CCGCGCC1648400.06.58490372
TCGCGGC358650.06.580024735-39
GGGGATC2012850.06.46322542
GCCATAC1906650.06.3065223
GTATGGC1907900.06.2330952
CCCGGGG1833700.06.106668
CGCGCCC1321300.06.0650893
Produced by FastQC (version 0.11.5)