EGAF00005754240 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005754240
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	477330850
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGATCCG	48980	0.0	10.866291	4
TATCGCG	25875	0.0	8.77295	20-24
ACCGCGC	124680	0.0	7.888152	1
GATCCGT	47465	0.0	7.772064	5
CTAGTAC	166365	0.0	7.2230306	9
AGCGTCG	228680	0.0	6.3640337	9
GCCATAC	196830	0.0	6.0012474	3
GGGGATC	202735	0.0	5.9717164	2
ATCGCGG	41165	0.0	5.722153	20-24
ACCGTGC	142310	0.0	5.6378655	1
GAGCGTC	262740	0.0	5.6273413	8
CCTTCGT	174555	0.0	5.4606085	1
CTCACGC	395850	0.0	5.3782024	3
GCTCACG	399015	0.0	5.330235	2
TACTAGT	245150	0.0	5.238785	7
ACTAGTA	249940	0.0	5.2108865	8
GGGATCC	249860	0.0	5.1425524	3
CCGCGCC	195970	0.0	5.041493	2