EGAF00005754245 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005754245
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	374939331
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCCG	73940	0.0	8.648251	5
ACCGCGC	91695	0.0	8.642624	1
ATCGGAA	132865	0.0	8.098311	1
TCGGAAG	143115	0.0	7.5936184	2
CGGAAGA	160030	0.0	6.723039	3
CCGCGCC	124735	0.0	6.5271516	2
CCGGGGG	102810	0.0	6.4595237	9
GGATCCG	34805	0.0	6.4156866	4
GGCCCGG	108575	0.0	6.0965104	6
CGCGCCC	99620	0.0	5.945778	3
TATCGCG	15580	0.0	5.8073645	30-34
ATCGCGG	17910	0.0	5.44046	30-34
GCCCGGG	132555	0.0	5.354599	7
GATCCGT	33710	0.0	5.26961	1
ACTGCGC	102165	0.0	5.2091284	1
CCCGGGG	137460	0.0	5.0053034	8
ACCGTGC	111130	0.0	5.0042057	1