FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005754610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005754610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences939202
Sequences flagged as poor quality0
Sequence length20-76
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAATACTACACGATCACCAGTAGTATCCCACAC18940.20166055864446628No Hit
CCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACG16500.1756810568972383No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC16010.1704638618742294No Hit
GACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAATACTACACGATCACCA15090.16066831203511064No Hit
GTAATATACGGCCGTGTCCGCAGCGGTCACAGAGGTCAGCCTCAGGGAGA14830.15790000447188146No Hit
GGATTACCTGTGGGACAAACAACGTTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCC14040.1494886084143773No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG13670.1455490938051665No Hit
CCCCAGGACAGACGGCCAGGATTACCTGTGGGACAAACAACGTTGGAAGT12020.12798098811544267No Hit
CCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGACCCCT12010.12787451474762618No Hit
CCTCAGAGGAGGGCGGGAACAGAGTGACCGAGGGGGCAGCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTC11410.12148611267863568No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT11330.12063432573610362No Hit
GGCCTGGACCGTTCTCCTCCTCGGCCTCCTCTCTCACTGCACAGGCTCTG11290.12020843226483759No Hit
GCCATGGCCTGGACCGTTCTCCTCCTCGGCCTCCTCTCTCACTGCACAGGCTCTGTGACCTCCTATGTGCTGACT11170.11893075185103949No Hit
GTAGTATCCCACACCTGACAGTAATAATCGGCCTCATCCCCGCCCTCGAC11050.1176530714372414No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT11040.1175465980694249No Hit
CTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCAGGCGTCAGGCTCAGATAGCTGCTGG10810.1150977106096452No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTCTAGTCTCC10690.1138200301958471No Hit
GTCTCTGGTGCCTCCAGCAGGAGTTTCTACTGGAGCTGGATCCGGCAGCC10500.11179703620733347No Hit
GTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTC10410.11083877589698489No Hit
GGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTT10290.1095610954831868No Hit
GTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCAGGCGTCAGGCTCAGATAG10200.10860283517283822No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGG10140.10796399496593918No Hit
CCTCTCTCACTGCACAGGCTCTGTGACCTCCTATGTGCTGACTCAGCCAC10020.10668631455214109No Hit
ACCCTACTGATGGTCAGGGTGGCCGTGTTCCCAGACTTGGAGCCAGAGAT9850.10487626729926043No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCT9750.10381153362109537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)