FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005754633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005754633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429064
Sequences flagged as poor quality0
Sequence length20-76
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAAT6400.1491618965935152No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGCTGCAC6270.1461320455689594No Hit
AGCATGCACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA5250.12235936829936792No Hit
GTGCATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGAT5180.12072791005537636No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA4540.10581172039602484No Hit
GTATCAACGCAGAGTACGGGGGAAGGCGCTTTGTGAAGTAGGCCTTATTT4470.10418026215203327No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)