FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005754673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005754673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166
Sequences flagged as poor quality0
Sequence length28-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATCTCGTATGCCGT2917.46987951807229No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATCTCGTATGCCG137.83132530120482No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATCTCGTATGCC95.421686746987952No Hit
ATACACATCTCCGAGCCCACGAGACTAGCGCTCATCTCGTATGCCGTCTT31.8072289156626504TruSeq Adapter, Index 7 (95% over 21bp)
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC21.2048192771084338No Hit
CAGCTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATCTCGTATGC10.6024096385542169No Hit
GTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTT10.6024096385542169No Hit
ATCTACGGTGAGCGCTTCCCCGATGAGAACTTCAAACTGAAGCACTACGG10.6024096385542169No Hit
CTTCCACCTCCCAGTAATGTCTCCCTGATGTGAAGTTTTCACAGCCAAGGACACAGTAACGCCATTCAAATCTCT10.6024096385542169No Hit
CTTCACGGAGTCCGCGTAATCTGTGTCACTTCCATCACCATTAATATGTGAGACCCATGTCAGTCACTTCC10.6024096385542169No Hit
CTTATACACATCTCCGAGCCCACGAGACATGCGCAGATGTCGTATGCCGT10.6024096385542169No Hit
GAAAGAGTCCACCATGCACCTGGTGTTGCGCCAGCGAGGTGGCATTATTGAGCCTTCTCTCCGCCAGCTTGCCCA10.6024096385542169No Hit
GTTTTAAGTGCTTGTGGCTCACTGAAGATTAATTGAGGATTTCCATGCAATGAGAAGAAAAACCCATCTCTC10.6024096385542169No Hit
TGACAAAACTCACACATGCCCACCGTGCCCAGCACCTGAACTCCTGGGGG10.6024096385542169No Hit
GTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGATTTTAACGTAATTA10.6024096385542169No Hit
AGTAACCAAAACATCCAAAGCCGACACCAACATATGTCATTAAAAAAGCAGGTACCAGCAAAAACCAGGAA10.6024096385542169No Hit
CTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATGTCGTATGACGT10.6024096385542169No Hit
ATGATGGCAAGAAAAATGAAAGACACAGACAGTGAAGAAGAAATTAGAGAAGCATTCCGTGTGTTTGATAAGGAT10.6024096385542169No Hit
AGCCTTCCGTGCCTTCTTTTCACTCCGACTCTGTTTTGCTTTACTGACTGGTTCTTCATCGATTTCAGCTGCTGC10.6024096385542169No Hit
CAACTTTGGTGGACCACCTGATAATTTTGCAGTGGGGCCAGTGAAC10.6024096385542169No Hit
CAACCAACCCCCTGGCCCAGACATCTGTAGAAATAAGCACTCGGCTGGCG10.6024096385542169No Hit
GTCCTGGCTTCTGCTGGTACCAAGCTAAGTAGTTCTTACTACTGGAGCCG10.6024096385542169No Hit
GTGGCAGTGGGTCTGGGACAGAGTTCACTCTTACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTA10.6024096385542169No Hit
TTCCGAACGTGAAGCAAATCCCTGCGTAAACCGAAATACCCCCAACGAGTGGTATCAACCCCTGGTG10.6024096385542169No Hit
CTTATACACATCTACGAGCCCACGAGACTAGCGCTCATCTCGTATGGCGT10.6024096385542169No Hit
ATACACATCTCCGAGCCCACGAGACTAGCGCTCAGCTCGTATGCCGTCTT10.6024096385542169No Hit
CTGCTCATCAGATGGCGGGAAGATGAAGACAGATGGTGAATCCACAGTTCGTTTGAACTCCAACGTGGTCCCT10.6024096385542169No Hit
GTAGTAAAATATTGCTGACAGTAATAAACTGCCACATCTTCAGCCTGCAGGCTGCTGATGGTGAGACAGAAAA10.6024096385542169No Hit
GTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTTCTGGGCAACCTCCTCT10.6024096385542169No Hit
CTTATACACATCTCCGAGCCCACGAGACTAGCGCTCAGCTCGTATGCCGT10.6024096385542169No Hit
CAGCCCAACCCTTGGGACCGACTACAGCCCCAGGATGCGACGAGCCGACA10.6024096385542169No Hit
CTCTTATACACATCTCCGAGCCAACGAGACTAGCGCTCATCTCGTATGCC10.6024096385542169No Hit
GTGCTGGGCACGGTGGGCATGTGTGAGTTTTGTCACAAGATTTGGGCTCAACTCTCTTGTCCACCTTGGTGTTG10.6024096385542169No Hit
CTTATACACATCTCCGAGCCCACGAGACTAGAGCTCATCTCGTATGCAGTCTTCTGCTTGAAAAAAAAAAGGGGG10.6024096385542169TruSeq Adapter, Index 7 (96% over 26bp)
GTTCCTGAACCATGAGGGCGACCTCTTCCGTACCCGTCTCACGCATTCGC10.6024096385542169No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT10.6024096385542169No Hit
ACAATGGCCTCCTCCAACAGCCCTCTGCCTTGATGTTGCTCACCAGCCGC10.6024096385542169No Hit
GTATAAGGTGGAGGGCTTCCCCACCATCTACTTCGCCCCCAGTGGGGACA10.6024096385542169No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAGCATTTTTAAAATTTTTTTTTT10.6024096385542169No Hit
GAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCATCTCCAAAGCCAAAGGGCAG10.6024096385542169No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATGTCGTATGCC10.6024096385542169No Hit
TTCCAGTGCAGGAGATGGCGACTGATTGTCCAGGAGACCCGGACGCGGAGGGAGGCTGAGTCAGGGCAGACTGGG10.6024096385542169No Hit
ATCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA10.6024096385542169No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTTTGTGGGACTTCCACTGCTCAGGCGT10.6024096385542169No Hit
ATACTACTCCGTTCACTTTCGGCCCTGGGACCAGAGTGGATATCAAACGAACTGTGGCTGCACCATCTGTCTTCA10.6024096385542169No Hit
GTGCAGTCTCCCTGGTTGCTGATGGAGAAAATGACAAAAAAAAATACTAT10.6024096385542169No Hit
GACAAAGACAGAAAACACTCTCACAATCATCACCCAGAACTCTGAAGATC10.6024096385542169No Hit
GGTATCAACGCAGAGTACGGGAGGAATGATGACAAGAAAAGGCCGAATTGCAGTGTCTCCATCAGCAGTTTGCT10.6024096385542169No Hit
TCTCACTGGTGAAAAGAAAAACCACCCTGGCGCCCAATACGCAAACCGCCT10.6024096385542169No Hit
CGCACGGACCCCCATCTCTGTGACTTCCTGGACACTCACTTCCTAGATGA10.6024096385542169No Hit
GTTGAGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTACACGGTGCTCCCTTAATGCGTGACCTGGAAG10.6024096385542169No Hit
GAACCAAGCTACGTAGTTCTGACTGTTGGACCTGTAAAAAACACTCTGGCTGGACCTGCAGGTGATGGTGGCACT10.6024096385542169No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATCTAGTATGCC10.6024096385542169No Hit
CTTATACACATCTCCGAGCCCACGAGACTAGCGCTAATCTCGTATGCCGT10.6024096385542169No Hit
CAGATGTAGGTCTGTCCATGGCCGAAGGAGTGCTCGCCGGTGCTTCGGTG10.6024096385542169No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAGCGCTCAGCTCGTATGCC10.6024096385542169No Hit
GATGGGAAAGTTGCTGAGACAAGAAAGCCTAGGGAAACTTTAGGCTAGATACAAAATTCACACAGGGAAAGGCA10.6024096385542169No Hit
CTTATACACATCTCCGAGCCAACGAGACTAGCGCTCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG10.6024096385542169Illumina PCR Primer Index 7 (96% over 28bp)
TCTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATGTCGTATGCCG10.6024096385542169No Hit
ATCCTATTCTAGAGTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCAATGGTGCAGC10.6024096385542169No Hit
AGTTACCCTAGGGATAACAGCGCAATCCTAATCTAGAGTCCATATAAACA10.6024096385542169No Hit
GTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAG10.6024096385542169No Hit
CTTATACACATCTCCGAGCCCACTAGACTCGACGTCAGCTCGTATGGCGTATTCTGCTTGAAAAAAAAAATG10.6024096385542169No Hit
CTCCTGGCTGAAGCGCGCGAAGCGGCCGGCGTCATCCACGAAGGCATGGC10.6024096385542169No Hit
CTTCTCCCTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGC10.6024096385542169No Hit
GGCAGTGGGTAGCAGAACAAAGGTAGGAATCTCACAGGCTCTCCTGTGTC10.6024096385542169No Hit
AGGCAGACAGCAGGCCAGCCTGAATGAAATGAGTGACCATATGGACATAG10.6024096385542169No Hit
GGCCCTGATGGGTGACTTCGCAGGCGTAGACTTTGTGTTTCTCGGAGTCTGCTTTGCTCAGCGTCAGGGTGCTG10.6024096385542169No Hit
ATACCAAAATTCAACACCCTTCCCCACCAAATCTGAAATAATTCTGGTCATAAGCAACTTGGGTAAGGG10.6024096385542169No Hit
GGTGGGGAGATGGCACAGGAGGGAAGAGCATCTACGGTAAGCTATGCCCGGATGGGAAGTTCTGTCTGCAGCA10.6024096385542169No Hit
CCATAACGAGAAAAGAAAGTTCCTGTGGCATCTAAGCCAAAGCTATTAAG10.6024096385542169No Hit
CAGCAGTTTAATCTGGCTCGTAAGCAGCCTTTTACTCGCTGGGTGATGGCAATGGGAATACCGCTAACC10.6024096385542169No Hit
GACATAGTCTGAGGCAAGATGGAGGGTATGAGGGGCCTTCACACTTCACT10.6024096385542169No Hit
GTAAAACCACGACGATTGGTAAGCTGGCGCGTCAGTTTGAGCAGCAGGGT10.6024096385542169No Hit
GTATCAACGCAGAGTACGGGCAAGAATG10.6024096385542169No Hit
GTAAAAAAAGGAACACACCAACCCTCACACACCAATAATCTAAATAAAACCAGTTAAAATCCAATATTAACTGCA10.6024096385542169No Hit
ATACACATCTCCGAGCCCACGAGACTGCAGCTAATATCGTATGCCGTCTT10.6024096385542169No Hit
CTCCGGAGCATGGAGTACTCCTTCGCCGGTCACGTCCTCCTTGACCTTGA10.6024096385542169No Hit
GCTCTGCGCGGGGACGGCACTCCCGGCGGGCTCGGCGCGGGCCCGGGCGCCCAGCAGCGCCAGACTCAGCAGCAG10.6024096385542169No Hit
GCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCCAGCGTACTCCAAAGATTCAGGTTTA10.6024096385542169No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAGCGCTCAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAGG10.6024096385542169Illumina PCR Primer Index 7 (96% over 26bp)
TACAACTGCTCATCAGATGGCCGGAAGATGAAGACACAAGGTGCAGCCACAGTTCGTTTGATCTACAGGTTCGAC10.6024096385542169No Hit
ACTAGTGTGTCTGATCAGTGACTTCTAACCGGGAGCTGTGACAGTGGCATGGAAGGAAGATGGCAGCCACGTAAA10.6024096385542169No Hit
CTACCATACTTTGGCCACTGACACATTTTCCACAGGCCACCTACCCCTATATCCTACCACCA10.6024096385542169No Hit
CTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATGTCGTATGCCGTCTTCAGCGAGAAAAAAAAAAGGGG10.6024096385542169No Hit
GCCAATGGTGCATCCAGCTCTCAAAGACCTTCCAGTCTATGGTCTCCATGGTGTTCTTAAGGTGTCTCAGGTTCT10.6024096385542169No Hit
GAAGGTGGATAACGCCCTCCAATCGGGTAACTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTA10.6024096385542169No Hit
GACAGCTTCCTGATGGTTGTGTGCCGTGTTCCCAGAATG10.6024096385542169No Hit
CACAAAGTCTAAAACTACACTAAATACCAACACACTCTCCACCACTCAAAAAACCAATTACATTGTT10.6024096385542169No Hit
GGTGGGGCCCGCGGCGGGATTTTCCCGGGCGGCGAGAGCGGATCTATCTT10.6024096385542169No Hit
GCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCTGCCGAACACCCGAGTGCTGCCGCTTGTATATGAGCTG10.6024096385542169No Hit
GAGTACGGGGACTTCTCGAAGGTGGGCAGGTCCCCTTGTGGAGGATGGAG10.6024096385542169No Hit
CTTTGCAAACTGGATGCACCAAAGATCAGGAGCTTAGGGGCTTTCCCTGG10.6024096385542169No Hit
GCAGTAACTACTCCACTGCTGGCAGAGAGAATTCTGGAGCCGCCAGCCATGGTTGCCCCAGAG10.6024096385542169No Hit
GGCAGGCGATGACCACGTTCCCATCTGGCTGGGTGCTGCAGAGGCTCAGC10.6024096385542169No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATCGGGGTTGCCA10.6024096385542169No Hit
CATTAGCATAATTAAAGCCAAGGAGGAGGAGCGGGGTGAGGTGAAAGATG10.6024096385542169No Hit
CATATACACATCTCCGAGCCCACGAGACTAGCGCTCATCTCGTATGGCGT10.6024096385542169No Hit
ATGTGCTAGAGGGCAAAGAGTTGGAGTTCTATCTTAGGAAAATCAAGGCCCGCAAAGG10.6024096385542169No Hit
GTGCCGGTGCGCGGGATGCCGGTGATGACGATCGGGCGCAGCACTGCTTG10.6024096385542169No Hit
AAAAAATGACCTGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACAGAGATCTAGAGAATCAACCGCCGC10.6024096385542169No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATGTAGTATGCC10.6024096385542169No Hit
CTTATACACATCTCCGAGCCCACGAGACTGCAGCTAATCTCGTATGCCGT10.6024096385542169No Hit
CCTTCAAGGTCACCATCTCCAACACTGAACTTATGTTCTTTGTCCCAGTC10.6024096385542169No Hit
GCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACCGGAGAAATTGTGTTGACGCAGTCTCCAGGCACG10.6024096385542169No Hit
GTGCAGCCACAGTTCGTTTGATATCCACTCTGGTCCCAGGGCCGAAAGTG10.6024096385542169No Hit
TTCCCACTCTCTGCAATATGGATCAGGCAGTGTTTCTGATAGGATGTGAAATGGACTCTCCTCGGGTGGGTCCAG10.6024096385542169No Hit
TCTTTGGTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGATTCAGTGGCAGTGGATCTGGGACAGATTTCACT10.6024096385542169No Hit
CCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAAGAGCTTC10.6024096385542169No Hit
GCTGTAGTTTCTGTGGGACTTCCACTGCTCAGGCGTCAGGCTCAGATAGC10.6024096385542169No Hit
CTTGTACTCCTTCACATTCAGCCAGTACTGCTGCAGGACGCTCAGCACGCTGCCCACACGGTACGTGAAGGAGTA10.6024096385542169No Hit
GACATACAGAAATAGTCAAACCACATATACAAAATGCCAGTATCAGGAGG10.6024096385542169No Hit
CTTTTGCTTGGGATCAGTGCTCTCTATTGATGTTCTTGCTGGTCTCCAGA10.6024096385542169No Hit
GCCTGGAGCCCAGAGATGGTCAGGGAGGCCGTGTTGCCAGACTTGGAGCC10.6024096385542169No Hit
CTCTGTGCTTGTGCCAAGGGGGCAATGGCGGCTTCCTGTGTTCTACTGCA10.6024096385542169No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGGCACT50.0177.069