FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005754733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005754733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences202
Sequences flagged as poor quality0
Sequence length34-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGTATGCCGT3014.85148514851485No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGTATGCCG209.900990099009901No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGTATGCC167.920792079207921No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31.4851485148514851No Hit
ATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGTATGCCGTCTT31.4851485148514851Illumina PCR Primer Index 11 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCGCGTATGCCGT20.9900990099009901No Hit
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGTATTCCGT20.9900990099009901No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCGCGTATGCCG20.9900990099009901No Hit
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGTTTGCCGT20.9900990099009901No Hit
GTATAATAATCTGCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAACGAACTGTGGCTGCACCAT10.49504950495049505No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGTTG10.49504950495049505No Hit
GGGTCAGGCTGGAACTGAGGATCAGGTGGGGGAACTTCTCCCTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGA10.49504950495049505No Hit
TCTTATACACATCTCCGAGACCACGAGACTAAGCTGAATCTCCTATGCCC10.49504950495049505No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCACTGTTGAAGCTCTTTGTGACGGGCG10.49504950495049505No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTGGGTTGCCGTCTTATTCTTGTAAAAAAA10.49504950495049505No Hit
GGATGTCCACCACCATGTCCTTCCCTTTCAGCCGGAAGTTCACACAGAAA10.49504950495049505No Hit
AGGAGGAGGGGGGTGAGGTGAAAGATGAGCTGGAGGACCACAATAGGGGT10.49504950495049505No Hit
GAATAAGGACCCTCCACTCTCACTCTCCTCAACAGTTAACTTTCGCAGTT10.49504950495049505No Hit
CTCACTGTGCAGGGTCCTGGGCCCAGTCTGTGCTGACTCAGCCTCCCTCA10.49504950495049505No Hit
GCCCCCAGACTCCTCATTTATGGGACTAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGT10.49504950495049505No Hit
GAGACAGCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGT10.49504950495049505No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATAAAAGTTTTTTT10.49504950495049505No Hit
CTTATACACATCTCCGAGCCCACTAGACTACGCTGCATGTCGTATGCCGTCTTCTGGGTGAAAAAAAAAAGGGG10.49504950495049505TruSeq Adapter, Index 3 (95% over 22bp)
GGGGTGAGTGTTGTGACTCGTTGTCCGGTCAACAGTCATTTGGAGCGAGG10.49504950495049505No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCGCGTTTGCCG10.49504950495049505No Hit
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCATATCGTATGACGT10.49504950495049505No Hit
CTTGTTGTTGCTTTGCTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAGGC10.49504950495049505No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGTATTCCG10.49504950495049505No Hit
GTCCGGGAGATCATGAGGGTGTCCTTGGGTTTTGGGGGGAAGAGGAAGAC10.49504950495049505No Hit
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCATGTCGTATGCCGG10.49504950495049505No Hit
GTATACATAATTAATGTCGATGTTGGAGCTGCTTCCAGAACAAGAGATGGTGACCCTCTGCCCGGGGGTCCCAGA10.49504950495049505No Hit
GCCCAGCTGCAGCAGCCCCCACGGAAACACCATGCCCAGCCCGAAGAGCAGCACCGACACGCCCGACTGCGTCAG10.49504950495049505No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG10.49504950495049505No Hit
GGGCAGGATCCAGGAGAAAGTGGCCAAGGGCTAAGAGAGAAGAGATTGCA10.49504950495049505No Hit
ATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCG10.49504950495049505No Hit
ATAATAATCAGCCTCATCCTCGGACCGGAGCCCACTGATGGCCAGGGAGG10.49504950495049505No Hit
ACCTTCGCGCAAGGCATCGCCCTCGGCGCGCTGCTGCAGGGCATCACGGTCGATGGGCGCAGCTA10.49504950495049505No Hit
AACGCGAACCGGTGGAATACGCACCTCATCACCC10.49504950495049505No Hit
ATGCCACGGGATGGTTCCTTGCCATTGAAGAACTCTTTAACCAGTTGCTGAATCTTTGGAATTCGAGTCGAGCCA10.49504950495049505No Hit
CTATCTGAGCCTGACGCCTGAGCAGTGGAAGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCAC10.49504950495049505No Hit
AGGTGGGGGCACTTCTCCCTCTAACACTCTCCCCTGTTGAAGCTCTTTGT10.49504950495049505No Hit
GTGCAGGTAGGTGAAGCACTCAATGTCCACCATGTGGACCTCATCAACAA10.49504950495049505No Hit
ATCTAAGAGGCTTGGAGACACCAGCAAACTGCTAGAACTCAAACTCTTCAATTACTCAAAGAAGGAGCCATTTCA10.49504950495049505No Hit
GGAGGTGGGGAGGGTCTATTGCTTCAGGGGGAAGGGACTATGGCAATACA10.49504950495049505No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGGATGCCG10.49504950495049505No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGTTTGGCG10.49504950495049505No Hit
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCGGGTATGGCCG10.49504950495049505No Hit
ACTTCTGCCTTCATCTAGCAATTTACGAACAGCATTAACATCCCCATCTG10.49504950495049505No Hit
GTGCAACATTGGAAGACAGTCTGAATGGTTGTGTGTTAGGCGGAGTGACA10.49504950495049505No Hit
GCTTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGTCAGCAGCCACAGGAGCCCACTCCCAGGTGCAG10.49504950495049505No Hit
TCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTACTATTGTGCAACATTGGATGACA10.49504950495049505No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTCTAGTCTCC10.49504950495049505No Hit
TTAATAACTATTACACAAAGTCACCAACAATATCCTCAAAATAAATACAA10.49504950495049505No Hit
CCCCAGGCTGGACCAAGCCTCCCCCAGCCTCCACCAGCTGCACCTCACAC10.49504950495049505No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGGATGCC10.49504950495049505No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTAGTATTCCG10.49504950495049505No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTACGCTGCAGCTCGTATGCCGTCTTGTGCTTGAAAAAAAAAAGGG10.49504950495049505Illumina Paired End PCR Primer 2 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGTATGGCGT10.49504950495049505No Hit
GTCCAGCTTAACGCACTTCAAGGGGCCACGAGCAACAACTGTGGCAGCACGAGGACGATTCATCAGT10.49504950495049505No Hit
TCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTATTGTGCAACATTGGATGACAGTCTGA10.49504950495049505No Hit
AGAGACAGCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCG10.49504950495049505No Hit
GTAACTCTGTTGACAGTAGAAAGTTGAAAAATCTTCACGTTCCAGACTGC10.49504950495049505No Hit
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCAGCTCGTATTACGT10.49504950495049505No Hit
ATACACATCTCCGAGCCCACGAGACTACGCTGCAGCGCGTATGCCGTCTT10.49504950495049505No Hit
AGACAGCATCTCCACCATGGCCTGGGCCCTGCTGCTCCTCACCCTCCTCACTCAGGGCACAGGGTCCTGGGC10.49504950495049505No Hit
CCACGGGAGACTAGAGCTGCAGGATCCCAAGGGAGGCGTCTCTCCTCCCA10.49504950495049505No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGTATGCCGTCGTAATCGTGAAAAAAAAAAG10.49504950495049505No Hit
GCCATTGGTACCTGTATTGGGGAAACATAGCATACAAGCAAGAAGCTTAC10.49504950495049505No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACGCTGCAGCTCCTATGCCG10.49504950495049505No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.49504950495049505No Hit
CTGTTATGTCCAAATATATTTTAATTATGCATTTATTTTGCTACTTTTAT10.49504950495049505No Hit
CGGCGGGCGGGCCCGGGCCCCCCGCGGCGGAGGGCGTAGCGTCCGGAGGACGGGGGGCCCGCCGGGCAGGGGTGC10.49504950495049505No Hit
CCCCCTGGGCCGCGGCGACCCAGGTGACGAGACGCCATTTGAGCGAGCGCGGGTGCCGGATGCTCACGGAACCTC10.49504950495049505No Hit
TCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTATTG10.49504950495049505No Hit
GAGAAAGTATTGTCACTATATCCAGGCTGTGACATTTTATTTTTGTTCTGAATACTTAACTCAAGGTCAGGATA10.49504950495049505No Hit
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCCTCGCGTATGCCGT10.49504950495049505No Hit
GGACGCCCTGGATGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACT10.49504950495049505No Hit
ACCTGGGTTCGACCGGCCTTGCTTCAGTACAAGCTGCGGGCGTTGGAACT10.49504950495049505No Hit
AGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTC10.49504950495049505No Hit
CTTGTGATTCTCCTCTCTTCTTGGTGTAGATGCAGGTCAGGGCCAAGTACTCCCAAAGCATCTCCAGCAGATAGT10.49504950495049505No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCGGGTATGCCG10.49504950495049505No Hit
GAGACAGTCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCG10.49504950495049505No Hit
GTGTGCAGGATAACCGGAACACCATAATGTTCAGCCATCTGGTGAACGTGATGCGCACCAGAGAT10.49504950495049505No Hit
CTCCAGTAGTAACCACTGAAAGACCCACCATAGACACCGCAGGTGAGGGACAGGGTCTCCGAAGGCTTCAACAGT10.49504950495049505No Hit
GGGCGTGAGCCTCTACAGTTTCCAGCACGAAACCTTCCAGGGGAAGATGAGCCTGGAGGACTGCTTTAAGAC10.49504950495049505No Hit
CATAAATGAGGAGACTCGGGGCATTTACTGAGAACTGCTCATACCACTAA10.49504950495049505No Hit
ATTCCCATAATGGAAGGCTCCACACCCACTTGGGACCAGGAAACTATCCG10.49504950495049505No Hit
CTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGT10.49504950495049505No Hit
GTGTTTGGCAAGGGTTGTAGTGGTTTGGAATCTGCTTGGCTCCCGAGCTG10.49504950495049505No Hit
AGCTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCCAGCGTA10.49504950495049505No Hit
GACAGGGCCAAAGGATGGGAGGGGGTCAGGCTGGAAATGAGGAGCAGGTGGGGGCACTTCTCCCTCTACCACTCT10.49504950495049505No Hit
CCTTTGGCCTCTGACCCTTTTTCCACAGGGGACATAACCCTATTGCGGTCCTCCAGCTCAAATTTCACCACCCCC10.49504950495049505No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG10.49504950495049505No Hit
ATACACATCTCCGAGCCCACGAGACTACGCTGCATGTCGTATGCCGTCTT10.49504950495049505No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTAGTTTGGCG10.49504950495049505No Hit
GGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCC10.49504950495049505No Hit
ATACACATCTCCGAGCCCACGAGACTACGCTGCAGCTCGTATGCCGTCTT10.49504950495049505No Hit
GTAATCATAAAAGAGAATACATATTTCAGGTGAGCAACATAAATGGAACATTTTGATAATTAGATAATGAACATA10.49504950495049505No Hit
GTATTCATGGCGCGTTCTGCGGTAACGCGCAGTGCAGTTTCGTGGTGATTCAGCGCGGCAAGCAG10.49504950495049505No Hit
GAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCGGGTAACTCCCAGGAGAGTGTCACAGAGCAGGAC10.49504950495049505No Hit
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCAGCTCGTATGCCGT10.49504950495049505No Hit
GGTCTGCGTCGCGCGGCAGCTGTGCCGCATGAAAATCCAGGTG10.49504950495049505No Hit
CACCAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACA10.49504950495049505No Hit
GCGCGCCTTGAGGCTGAGCTTCACATTGTCGGAGAAGCGGTGGGTGATCGAGCCGCCAC10.49504950495049505No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATGTCGTATGCCG10.49504950495049505No Hit
GCGTCAGATGTGTATAAGAGACAGACTTGATATGGCATCACAATTGTTTT10.49504950495049505No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGTATGGC10.49504950495049505No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCGCGTATGCC10.49504950495049505No Hit
ATAGAAGTAGAGAAATTTTCGTGATAGATGTTAACTGGAAAAGTGGAGTTGGCTTGACAAGAT10.49504950495049505No Hit
CATCAATCTCACCCGGTCCGTCGAACGGCAATATCTCCAGGATCCGGCGCGCCTGCTCAGTTCGCTCCGAGAGGA10.49504950495049505No Hit
ATACACATCTCCGAGCCCACGAGACTACGCTGCATATCGGATGCCGGCTT10.49504950495049505No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATATCGTATGCCG10.49504950495049505No Hit
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTAGTAAGCCGG10.49504950495049505No Hit
GCGTCAGGGTGCTGCTGAGGCTGTAGGTGCTGTCCTTGCTGTCCTGCTCT10.49504950495049505No Hit
GTATAGGTTGGGGCTCTCTTTAGCGATGCACACAACTTTGCAGCACTGTAAGAGTATGAGGACAAAGTCCTAAT10.49504950495049505No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGACCTTCTCCCTCTAAAACTCTCCC10.49504950495049505No Hit
GGTAAATCCTGCAAGCCAATCCCAGTCATGCTCCTTGGGGTGACCCTCTT10.49504950495049505No Hit
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCGGGGATGGCGTGTTCGGCGTGAAAAAAAAAATTGGG10.49504950495049505No Hit
GCCCCGAAGCGCTTGGCGATCCGGCCATATTCGGCATGGGCTTCCACGATCGCTGTTC10.49504950495049505No Hit
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGTATGCCGG10.49504950495049505No Hit
GTACAAGGTAGTGGGTCGCTGCCTGCCCACCACCAAATGCCACACGCCGCCCCACTACCGCATGCGAATCTT10.49504950495049505No Hit
ATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGTATGCCGTCGT10.49504950495049505No Hit
AACACGTTCCCATCTTTGGGGGTGCAGTCGAGGCTCAGCGGGAAGACCTTGGGGCTGGTCGGGGATCCTGACGAG10.49504950495049505No Hit
CGACATCAAGCTCTCGGCCGATCTCTGGGCGATGTCGAAGGAGGCCGACGGGATCCTCGAT10.49504950495049505No Hit
GTACTTGTTGTTGCTTTGCTTGGAGGGTGTGGTGGTCTCCACTCCCGCCT10.49504950495049505No Hit
CTGTGTGGCTGGGGGATAGCCCCGTAACTAAGTTCTGGCCAGTGGGAGAA10.49504950495049505No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGGCAGGGTGCTGCTGAGGCTGTAGGTGCTGGCCTT10.49504950495049505No Hit
GGAAAGAAGTGTGTAATTTTGGATTGCCTGCCCTTGGCTGAAATACAGGG10.49504950495049505No Hit
GTATGCCCCCGGGGATGGCCTTGCTCCATGTCTCGATGGAGGGTGTGCCA10.49504950495049505No Hit
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCAGCGCGTATGGCGT10.49504950495049505No Hit
CGGCCGGCACGCTCGGCTGGCGCGCCTGGGCCCTCGCGGTCGTCCTGCTG10.49504950495049505No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGGGGG100.0139.070