FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005754902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005754902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1052618
Sequences flagged as poor quality0
Sequence length20-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAACCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCT17480.1660621422016344No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT15270.14506687136264057No Hit
GGTTAGGAGACTGTCCTGGCTTCTGCTGGTACCAAGCTAAGTAGTTCTTACTACTGGAGCCGTATAAAACACT13640.12958167160356368No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13190.12530661645535227No Hit
GTATGATATTGCTGACAGTAATAAACTGCCACATCTTCAGCCTGCAGGCTGGTGATGGTGAGAGTGAAATCTGTC12610.11979654537543534No Hit
GAGTAGTATGATATTGCTGACAGTAATAAACTGCCACATCTTCAGCCTGCAGGCTGGTGATGGTGAGAGTGAAAT11420.10849139953905404No Hit
GTTTTATACGGCTCCAGTAGTAAGAACTACTTAGCTTGGTACCAGCAGAA11090.10535635909703234No Hit
ATATCATACTACTCCGTTCACTTTCGGCCCTGGGACCAGAGTGGATATCAAACGAACTGTGGCTGCACCAT11080.10526135787151654No Hit
ATACTACTCCGTTCACTTTCGGCCCTGGGACCAGAGTGGATATCAAACGA10580.10051129659572608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)