FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005754993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005754993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences996137
Sequences flagged as poor quality0
Sequence length20-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT13600.13652740536693245No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC11900.11946147969606591No Hit
GTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGG10880.10922192429354596No Hit
CAGTATCACCAGTCTGAGACCTGAAGATTCTGCAACTTATTATTGTCAACAGAGTTACAGTAACACTCCGTACA10110.10149206384262406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)