EGAF00005755009 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005755009
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1298886
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATTACTGTCAGCAGTTTGATAGCTCACCGTACACTTTTGGCCAGGGGA	3004	0.23127510805413254	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	2778	0.21387558261464057	No Hit
CAGTAATACACTGCAAAATCTTCAGGCTCCAGTCTGCTGATGGTGAGAGTGAAGTCTGTCCCAGACCCACTGCCA	1962	0.15105251731098804	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	1796	0.1382723349085293	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	1680	0.12934160503693165	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCGACGTCATCTCGTATGCCGT	1647	0.12680096636656335	No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT	1554	0.11964098465916179	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	1533	0.11802421459620013	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	1526	0.11748529124187958	No Hit
GTGTATTACTGTCAGCAGTTTGATAGCTCACCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAA	1521	0.11710034598879347	No Hit
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCA	1507	0.11602249928015237	No Hit
GTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATT	1485	0.11432874016657352	No Hit
CATCTATGCTGCGTCCAGCAGGGCCACTGGCATCCCTGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCA	1408	0.10840058326904749	No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC	1393	0.10724574750978916	No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT	1391	0.10709176940855471	No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG	1356	0.10439715263695197	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	1240	0.0	43.296898	1
GTATCAA	3275	0.0	40.095787	1
GTCGTAT	55	7.2669773E-6	37.73233	39
TCGTATG	405	0.0	36.77318	40
TATCAAC	3620	0.0	35.96894	2
ATCAACG	3830	0.0	34.175213	3
GACTCGA	445	0.0	33.831593	26
TCAACGC	3875	0.0	33.77834	4
CAACGCA	3920	0.0	33.47776	5
AACGCAG	4110	0.0	31.846973	6
CGTATGC	470	0.0	30.988085	41
TATGCCG	475	0.0	30.735128	43
CGCAGAG	4435	0.0	29.513206	8
CTTATAC	535	0.0	29.402403	1
ACGCAGA	4450	0.0	29.336922	7
AGAGTAC	4445	0.0	29.139269	11
GACGTCA	515	0.0	28.649342	31
ACGAGAC	540	0.0	28.49141	22
ACTCGAC	520	0.0	28.310406	27
AGACTCG	525	0.0	28.015932	25