FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005755053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005755053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63
Sequences flagged as poor quality0
Sequence length35-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGAGACTGTGCAGAAAGTGAGGAGGGGGAGCAGGAGAGGGGTCCAGGCCATGGTGAGATTCCCAGAGCTCTG11.5873015873015872No Hit
GTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAACTGGTACGTGGA11.5873015873015872No Hit
CTCAAGGGAAGGGGCTGGAGTGGGTTTAATACATTAGTAGTAGTGTTATT11.5873015873015872No Hit
CTTGGTACCAGCAGAAGTCAGGCCAGGCCCCTGTGCTGGTCATCTATGAGGACAACAAACGACCCTCCGGGATCC11.5873015873015872No Hit
GTCCCAGAGCTGGAGCCTGAGAAGCGATGAGGGAT11.5873015873015872No Hit
GCCGAAGAAGCCGTCGCGGGGTGGGACGAAGACGCTCACTTTGGGAGGCA11.5873015873015872No Hit
CTAGTCTCCCGTGGTGGGGGGTGAGGGTTGAGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTG11.5873015873015872No Hit
ATTGGAGGGGGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAG11.5873015873015872No Hit
TTGTGGAGAGAAACATCCGAATTATTGTTCCTCTGAACAACAGGGAGAAT11.5873015873015872No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA11.5873015873015872No Hit
GTTCCGAAGACATAATGATTACCACTGCTGTCTGTTGAGTAACAGTAGTAGTCAGCTTCATCCTCCACCCGGGCC11.5873015873015872No Hit
GGGCTGCCATCTGCCTTCCAGGCCACTGTCACAGCTCCCGGGTAGAAGTCACTGATCAGACACACTAGTGTGGC11.5873015873015872No Hit
GACCAGCACAGGGGCCTGGCCTGACTTCTGCTGGTACCAAGAAGCATATT11.5873015873015872No Hit
ACCTACACCTGCGTGGTGGCCCATGAGGCCCTGCCCAACAGGGTCACCGA11.5873015873015872No Hit
GACAGCAGAAAAGGTGCGATCGATGCTCAACGCGATTCAACACGGGGGTG11.5873015873015872No Hit
GCGCGGCACGGCGCAAGGAGGGGATCTGGGTGGACGATGCAACGTGGGGA11.5873015873015872No Hit
GACCTAGGACGGTGACCTTGGTCCCAGTTCCGAAGACATAATGATTACCA11.5873015873015872No Hit
GTGCTGGTCACCTTGTAGGTCGTGGGCCCAGACTCTTTGGCCTCAGCCTGCACCTGGTCCGTGGTGACGCCAGAC11.5873015873015872No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.5873015873015872No Hit
TGGCTGCTCGGTCCTGCTCAACCACAAGGTGCATGCCGTGATAGGGGTGCTGATGGATGACACGGATCCCCTGGT11.5873015873015872No Hit
GCATTGATGGTCAGCCAGGTGCCTTCACCTGCTATTTGGATGCAGGCCTT11.5873015873015872No Hit
ATCCCAGATCATCAGAATCCCAGTGCAACAGAAAACAGCACCAGTTTCAACAATTCTGATGTTGGACAAAGCCT11.5873015873015872No Hit
ATCCAGGATAAAGAAGGCATCCCTCCCGACCAGCAGAGGCTCATCTTTGC11.5873015873015872No Hit
GTGCTGTCCTTGCTGTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCA11.5873015873015872No Hit
GCCATATCGGGTTTGTCAGACATGGTTGCGGAGGAAAGCGAAGCGAGGCGCACGAGTACGAGCGAAGTCTGGT11.5873015873015872No Hit
CTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCCGT11.5873015873015872No Hit
ATTCAGGGGTGGGGACAGGCGGGCGGCTCAGTAGCAGGTGCCGTCCACCT11.5873015873015872No Hit
CTTCAAACCTCCATGATGCTGCTTACATGTCTCGATCCCACTTAACTATC11.5873015873015872No Hit
AAGTTATTTGGAATGGTGAGTTCATGGGTGGTTTGAGTAGATGCATCCAAACTTGCCCAATAGCCTTTCACCT11.5873015873015872No Hit
GCGTGTGGGGAGTGCCGATCTCGACCACCATCGAGATCGCGCCGCCCGCG11.5873015873015872No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTTT11.5873015873015872No Hit
GCCTTGGGCTGACCTAGGACGGTGACCTTGGTCCCAGTTCCGAAGACATA11.5873015873015872No Hit
CACACCTGTAATCCCAGCACATTGGGAGGCCAAGGCTGGAGGATCGCTTGAGGCCAGGAGTTCAAGATCAGCT11.5873015873015872No Hit
CATCTCCGAGCCCACGAGACCCTAAGCCATCTCGTATGCCGTCTTCTGCT11.5873015873015872TruSeq Adapter, Index 3 (96% over 26bp)
CTGGGGGAGGCTTGGTACAGCCTGGAGGGTCCCTCAGACTCTCCTGTGAAGCCTCTGGATTCACCTTCAGTAGTT11.5873015873015872No Hit
CAATCATGGAGTAACTCTTCCCATTTAGATTCTTTACCAAAAGATCAAATGACCTCTCTGTGAAATGCACCTGCA11.5873015873015872No Hit
GTGCAGGAGATGGTGATCGACTGTCCAGGAGACTCAGACACGGAGGCAGG11.5873015873015872No Hit
ACGGGAGAGGGAGAAGTGGGCCCCCGGCCCGGGGAGGAGGCGGCTCGGGGCGGCCGTGGGGGGGGGGGCGGGGGG11.5873015873015872No Hit
GCACGTGAACCTCTCCCCGGAATTCCAGTCATCCTCGCAGATGCTGGCCT11.5873015873015872No Hit
GGCTCAGATAGCTGCTTGACGAGTACTTTTTGTTGATTTGTTTGGAGGGTGTGGTGGTCTCCACTCCCCCCTTGA11.5873015873015872No Hit
AAGGGGTTGGGCTGGGACTCGCCATCGTCAAGTCGATCATCGAGGCGCATGGCGGTGAAGTACGTGTGGTCTCCG11.5873015873015872No Hit
GGTGATTGTATATGAGCTGCAGTAATAATCAGCCTCGTCCTCAGCCTGGCGCCCAGAGATGGTCAGGGAGGCCGT11.5873015873015872No Hit
GTGGTATCAACGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11.5873015873015872No Hit
GGGATAAACACTTGGAGGTGCTGACAGATGCAGGGTAGGTGAAAACTCCTGGAGGGATGAGGCTGGCTGAGGG11.5873015873015872No Hit
GTACTGGCTGTTGGGTATGGAGAAAAAAATGGGATCCCTTACTGGATCGT11.5873015873015872No Hit
ATTTCATATTGCTTCCGTGGAGTGTGGCGAGTCAGCTAAATACTTTGACG11.5873015873015872No Hit
AAAAAAAAAAAACCATAAATAAAAATACAAATAATAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11.5873015873015872No Hit
CTCCTGGACCCGCCAGAATGGCGAAGCTGTGAAAACCCACACCAACATCTCCGAGAGCCACCCCAATGCCACTTT11.5873015873015872No Hit
CGCCCGGCGGTGGCCGACTTGATGCGGCTGATCCAGTTCTGCGCGTGCTGGCGCAGGCCGTGGCGCTCGAGCAGG11.5873015873015872No Hit
ACCAAGGTCACCGTCCTAGGTCAGCCCAAGGCCAACCCCACTGTCACTCGGTTCCCGCCCTCCTCTCAGGAGCTC11.5873015873015872No Hit
GAGCTCAGGTTCAGGGAGAGCTGGTTCTTGGACGTGTCTACTGATATGGT11.5873015873015872No Hit
CCCCTGTACTTTGGCCTCTCTGGGATAGAAGATTTCAGCAGGCACACAACAGATGCAGTTACAGATTTCAAAT11.5873015873015872No Hit
CGCCCCTGCAGCAGGCTGCGCAGCGCCTGCCGCATGCGCGCGAGCATCTC11.5873015873015872No Hit
CTTGGAAGGCAGCAGCACCTGTGAGGTGGCTGCGTACTTGCCCCCTCTCAGGACTGATGGGAAGCCCCGGGTG11.5873015873015872No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATAAGATGGCGGGAAGATG11.5873015873015872No Hit
CGATTAAGGTGAGAGCTGCGCCTAAAATTTTTCCACAATGGATACATAGATAAGGTTTCTCTCCAGTATGAATT11.5873015873015872No Hit
AGACAGGGCCTGAGCTCGCCCGTCACAAAGAGCTTCAACAGGGGAGAGTG11.5873015873015872No Hit
ACACTAGTGTGGCCTTGTTGGCTTGAAGCTCCTCAGAGGAGGGCGGGAAC11.5873015873015872No Hit
TTTCACATGAACAGCCTTAATAAAAACCGCCAGGACTCCACAGAAAAGCAAATGGTTCTTCATCTTGACTTCA11.5873015873015872No Hit
GTTCCGGGTGTTGCACACTGCCCTGAACAGAAGCTCCTCTTACAGGGAGG11.5873015873015872No Hit
TTCAAAAAACTACAGAAAAAAACAATACAAAAAAACCAATAAAAATAAAC11.5873015873015872No Hit
GTCTTGGTCCTATTTCCTCCTGTGGCCCGGAGTTTGATGTGTAGGGCGGT11.5873015873015872No Hit
GTGCCACACTGGCGCCTAATCACCCGTTTAACAAGCAGAAATTAAATGTTGCTCAGCACATGTGTCTTTCAGCT11.5873015873015872No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGGGG50.070.069
GGAGAGT50.070.043
ACAAAGA50.070.025
CGTCACA50.070.021
CTTCAAC50.070.033
AGGGGAG50.070.040
GGAGAAG50.070.057
GAGAAGT50.070.058
GTGTTAG50.070.048
CTGAGCT50.070.010
AGCTCGC50.070.013
GTCACAA50.070.022
AGCTTCA50.070.031
AGAAGTG50.070.059
GAGTGTT50.070.046
CGCCCGT50.070.017
GACAGGG50.070.02
TTCAACA50.070.034
CGGGGGG50.070.070
GAAGTGG50.070.060