EGAF00005755307 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005755307
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	218606
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGT	2758	1.2616305133436412	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	386	0.1765733785897917	No Hit
ATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTT	375	0.1715414947439686	TruSeq Adapter, Index 11 (95% over 21bp)
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	345	0.1578181751644511	No Hit
GTATATTACTGTCAGCATTATGGTGGTTCACCTCCTCTCACTTTCGGCGG	325	0.14866929544477278	No Hit
ACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCT	323	0.14775440747280497	RNA PCR Primer, Index 11 (95% over 23bp)
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	300	0.13723319579517487	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	289	0.1322013119493518	No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA	279	0.12762687208951265	No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG	259	0.11847799236983432	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	235	0.10749933670622033	No Hit
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCA	234	0.1070418927202364	No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC	231	0.10566956076228466	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTACC	15	0.0022698557	69.62777	45
GCGGTAC	15	0.002284904	69.51189	44
CGCGGTA	15	0.0023108737	69.31413	43
TTTAACG	20	0.00799371	50.664337	34
CCTTATA	20	0.0083198855	50.15445	2
TATACAC	470	0.0	49.798744	3
CTTATAC	465	0.0	49.615158	1
TTATACA	480	0.0	48.761272	2
GGTATCA	240	0.0	45.974915	1
TACACAT	520	0.0	45.010403	5
ATACACA	530	0.0	44.161148	4
AGGGGGG	660	0.0	43.528687	70
CTAGATC	485	0.0	43.147945	33
ATCTCGT	505	0.0	42.411057	37
ACTAGAT	510	0.0	42.307648	32
GCCGTCT	545	0.0	42.270668	46
TCGTATG	540	0.0	41.960716	40
ACCGTAC	520	0.0	41.958527	27
GCTTGAA	580	0.0	41.923325	56
AAGGGGG	475	0.0	41.755188	69