EGAF00005755397 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005755397
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	417056
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	625	0.14985997084324407	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	604	0.14482467582291106	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	532	0.12756080718176938	No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC	524	0.12564259955497584	No Hit
GTTTTGGCCAGGGGACCAAGTTGGACATCAAACGAACTGTGGCTGCACCA	519	0.12444371978822988	No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG	466	0.11173559426072277	No Hit
GTACAGTGGAAGGTGGATAACGCCCTCCAATCGGGTAACTCCCAGGAGAG	461	0.11053671449397683	No Hit
CTTATACACATCTCCGAGCCCACGAGACATGCGCAGATCTCGTATGCCGT	456	0.10933783472723087	No Hit
GGTTTGTGCTGATACCAATTCAAATACTTGCTAATGTCCTGACTCGCCTGGCAAGTGATGGTGACT	452	0.10837873091383411	No Hit
GTCCCAACCAGGACACAGCATGGACATGAGGGTCCCTGCTCAGCTCCTGG	450	0.10789917900713573	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	443	0.10622074733369141	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	105	0.0	46.10996	39
GTATCAA	1005	0.0	43.54929	1
ATCTCGT	120	0.0	43.191715	37
TCGTATG	120	0.0	40.355927	40
TATCAAC	1115	0.0	38.634792	2
CGTATGC	130	0.0	37.269566	41
ATCAACG	1215	0.0	35.454975	3
TCAACGC	1215	0.0	35.454975	4
CAACGCA	1250	0.0	34.737934	5
AACGCAG	1285	0.0	33.791763	6
CGATTGT	90	2.2567163E-4	33.373913	70
ACGCAGA	1330	0.0	32.389317	7
CAGAGTA	1330	0.0	32.389317	10
CGTCTAA	65	2.195527E-5	32.09993	50
AGAGTAC	1360	0.0	31.928246	11
CGCAGAG	1360	0.0	31.674847	8
CTTATAC	155	0.0	31.127178	1
GCAGAGT	1410	0.0	30.796038	9
GTACTAA	45	0.0046441634	30.633099	1
AATCGTG	45	0.0046441634	30.633099	7