EGAF00005755398 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005755398
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	417056
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1047	0.25104542315660244	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	674	0.1616089925573544	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	589	0.1412280365226732	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	549	0.1316369983887056	No Hit
GTTTTGGCCAGGGGACCAAGTTGGACATCAAACGAACTGTGGCTGCACCA	534	0.12804035908846773	No Hit
GTCCCAACCAGGACACAGCATGGACATGAGGGTCCCTGCTCAGCTCCTGG	476	0.11413335379421467	No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC	452	0.10837873091383411	No Hit
GTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGC	441	0.105741195426993	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	434	0.10406276375354867	No Hit
GTACAGTGGAAGGTGGATAACGCCCTCCAATCGGGTAACTCCCAGGAGAG	424	0.10166500422005677	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGTAA	30	6.125428E-4	46.2731	46
GTATCAA	1100	0.0	40.420635	1
TCGGTAA	35	0.0012880855	39.787777	50
TATCAAC	1220	0.0	36.114597	2
ATCAACG	1250	0.0	35.23939	3
TCAACGC	1260	0.0	34.94714	4
CGTAAAA	40	0.0025022977	34.75527	48
CAACGCA	1275	0.0	34.535995	5
AACGCAG	1360	0.0	32.883392	6
TAGTTAG	75	0.0035107124	32.429413	70
ACGCAGA	1370	0.0	32.39227	7
TTAGTAT	55	2.8162455E-4	32.14468	63
AGAGTAC	1405	0.0	31.83019	11
GTGGTAT	230	0.0	31.470058	1
CAGAGTA	1445	0.0	30.949076	10
CGCAGAG	1425	0.0	30.900629	8
TTAGTTA	80	2.9276025E-5	30.774292	69
GGCACTA	45	0.004654531	30.61913	27
GCAGAGT	1515	0.0	29.292017	9
AGTACGG	1355	0.0	28.434849	13