EGAF00005755559 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005755559
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	520908
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATTATGACTGGCCTAGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCAT	1002	0.19235642378308646	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	898	0.17239128598524114	No Hit
GTCATAATACTGCTGACAGTAATAAACTGCAAAATCTTCAGACTGCAGGCTGCTGATGGTGAGAATGAACT	721	0.13841215723313904	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	714	0.13706834988136102	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	584	0.11211192763405438	No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA	561	0.10769656062106936	No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC	555	0.10654472574811674	No Hit
GGCCTAGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCC	554	0.1063527532692913	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	525	0.1007855513833537	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTTCG	15	0.0023918913	68.72874	10
GATCGGA	60	2.6406087E-7	40.744904	50
ACGTCGC	35	0.0013734786	39.273567	11
GGTATCA	530	0.0	37.617126	1
GTATCAA	1200	0.0	37.238792	1
CACCGAA	40	0.002082504	36.08224	67
TATCAAC	1380	0.0	32.1263	2
TCAACGC	1450	0.0	31.04941	4
ATCAACG	1445	0.0	30.91901	3
TGAGTCG	45	0.004620284	30.666796	34
CGCACGA	45	0.0046882057	30.575455	26
ATTCGTG	45	0.0047102836	30.546106	15
CAACGCA	1505	0.0	29.914717	5
GGCGCTA	70	3.7221267E-5	29.71473	42
ACGGGTG	95	3.307523E-7	28.941195	16
AACGCAG	1580	0.0	28.712229	6
TAGCGAT	145	4.2305146E-6	28.567183	70
TCGATCC	85	4.5596826E-6	28.30007	12
AGTAGGT	50	0.0076656844	27.648073	38
ACGCAGA	1645	0.0	27.575056	7