FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005755722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005755722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences768404
Sequences flagged as poor quality0
Sequence length20-76
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTGGGCCCAGTCTGCGCTGACTCAGCCACCCTCAGTGTCGGGGACCC43670.5683208312294054No Hit
GGGTTAGAGTTGGGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGAC35570.46290753301648613No Hit
GTGCAGGGTCCTGGGCCCAGTCTGCGCTGACTCAGCCACCCTCAGTGTCG34700.45158536394917254No Hit
CCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGT32130.4181394162445797No Hit
GTGGTAGAGAAGACAGGATTCAGGACAATCTCCAGCATGGCCGGCTTCCCTCTCCTCCTCACCCTCCTCACTCA31930.4155366187578409No Hit
CCCCTGAGGGGCGCTTATTATTCCTATCCATGAGGAGTTTGGGGGCCATTCCTGGGAGTTGCTGGTACCAATGTG29640.38573458753468226No Hit
CCTCACTCACTGTGCAGGGTCCTGGGCCCAGTCTGCGCTGACTCAGCCAC28380.3693369633682282No Hit
CCTCAGAGGAGGGCGGGAACAGAGTGACAGTGGGGTTGGCCTTGGGCTGA27960.3638710886460768No Hit
GTATCAACGCAGAGTACGGGAGCTTCAGCTGTGGTAGAGAAGACAGGATTCAGGACAATCTCCAGCATGGCCGG27470.35749423480356685No Hit
GTCCTAGGTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTC27130.353069479076111No Hit
GTGCAGGGAGAAGGGCTGGATGACTTGGGATGGGGAGAGAGACCCCTCCCCTGGGATCCTGCAGCTCCAGGCTCC26010.338493813150374No Hit
CCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAGGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGT25970.3379732536530263No Hit
GTTTGGAGGGTTTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCCATCTGCCTTCCAGGCCACTGTCACAGCTC25890.3369321346583308No Hit
GACCTAGGACGGTGACCTTGGTCCCAGTCCCGAAGATTGGACCACTCAGA24210.3150686357697253No Hit
GCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC24120.31389737690069286No Hit
CACTAGTGTGGCCTTGTTGGCTTGGAGCTCCTCAGAGGAGGGCGGGAACAGAGTGACAGTGGGGTTGGCCTTGGG22480.29255443750943516No Hit
GTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCGGGCGTCAGGCTCAGGTAG22240.28943108052534866No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCT21910.2851364646722297No Hit
CTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCGGGCGTCAGGCTCAGGTAGCTGCTGG20550.26743744176240625No Hit
GTGTCGGGGACCCCCGGGCAGAGGGTCATCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGCA19630.255464573323408No Hit
GACTATTATTGTGCAGCATGGGATGACAGTCTGAGTGGTCCAATCTTCGG19000.24726576124018096No Hit
GAGAAGGGCTGGATGACTTGGGATGGGGAGAGAGACCCCTCCCCTGGGAT18740.24388212450742056No Hit
ATTCAGGACAATCTCCAGCATGGCCGGCTTCCCTCTCCTCCTCACCCTCCTCACTCACTGTGCAGGGTCCTGGGC17970.2338613541834764No Hit
ACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGC17800.23164897631974846No Hit
GCCTTGGGCTGACCTAGGACGGTGACCTTGGTCCCAGTCCCGAAGATTGGACCACTCAGACTGTCATCCCATG16630.2164226110223268No Hit
GAGTGACAGTGGGGTTGGCCTTGGGCTGACCTAGGACGGTGACCTTGGTC16240.21134715592318623No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTT15890.20679226032139345No Hit
CCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCGGGCGTCAGGCTCAGGTAGCTG15840.20614156094970873No Hit
GTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGT15810.20575114132669794No Hit
CTCCAGCCCCTTGCCTGGAGCCTGGCGGACCCAGTGCATGCCATAGGAAC15700.20431960270899163No Hit
CATTGGTACCAGCAACTCCCAGGAATGGCCCCCAAACTCCTCATGGATAGGAATAATAAGCGCCCCTCAGGGGTC15600.20301820396562226No Hit
CTATTATTGTGCAGCATGGGATGACAGTCTGAGTGGTCCAATCTTCGGGA15520.20197708497092676No Hit
GGATGACAGTCTGAGTGGTCCAATCTTCGGGACTGGGACCAAGGTCACCGTCCTAGGTCAGCCCAAGGCCAACCC15380.2001551267302096No Hit
GTCCAATCTTCGGGACTGGGACCAAGGTCACCGTCCTAGGTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCC15370.2000249868558727No Hit
CCCTCAGTGTCGGGGACCCCCGGGCAGAGGGTCATCATCTCTTGTTCTGG15370.2000249868558727No Hit
TCCTAGGTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGG15350.19976470710719882No Hit
ATCTCCAGCATGGCCGGCTTCCCTCTCCTCCTCACCCTCCTCACTCACTGTGCAGGGTCCTGGGCCCAGTCTGCG15160.197292049494797No Hit
GGCTCAGGTAGCTGCTGGCCGCGTACTTGTTGTTGCTCTGTTTGGAGGGTTTGGTGGTCTCCACTCCCGCCTTGA14910.19403855263637357No Hit
GAGTACGGGAGCTTCAGCTGTGGTAGAGAAGACAGGATTCAGGACAATCTCCAGCATGGCCGGCTTCCCTCTCCT14760.1920864545213195No Hit
ACCTAGGACGGTGACCTTGGTCCCAGTCCCGAAGATTGGACCACTCAGAC14740.19182617477264563No Hit
CTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCC14710.19143575514963485No Hit
CTGATGGCCAGGGAGGCTGAGGTGCCAGACCTGGAGCCAGAGAATCGGTC14430.18779183866820057No Hit
CTGTGCAGGGTCCTGGGCCCAGTCTGCGCTGACTCAGCCACCCTCAGTGTCGGGGACCCCCGGGCAGAGGGTCAT13690.17816148796726722No Hit
CTCCAGCATGGCCGGCTTCCCTCTCCTCCTCACCCTCCTCACTCACTGTGCAGGGTCCTGGGCCCAGTCTGCG13590.17686008922389784No Hit
TATTATTCCTATCCATGAGGAGTTTGGGGGCCATTCCTGGGAGTTGCTGG13390.1742572917371591No Hit
GGAATAATAAGCGCCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAGG13330.17347645249113747No Hit
GTTTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCCATCTGCCTTCCAG13250.17243533349644197No Hit
GACTCAGCCACCCTCAGTGTCGGGGACCCCCGGGCAGAGGGTCATCATCTCTTGTTCTGGAAGCAGCTCCAACAT13180.1715243543760834No Hit
GTGCCAGACCTGGAGCCAGAGAATCGGTCAGGGACCCCTGAGGGGCGCTT12990.16905169676368162No Hit
CTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGT12670.16488722078489962No Hit
GTAATACACAGCCGTGTCCTCGGCTCTCAGGTTGTTCATTTGCAGATACA12590.16384610179020412No Hit
AGTGTGGCCTTGTTGGCTTGGAGCTCCTCAGAGGAGGGCGGGAACAGAGTGACAGTGGGGTTGGCCTTGGGCTGA12450.162024143549487No Hit
GGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGACTATTATTGTGCAG12140.15798980744504193No Hit
CCCGTGGGTGGGGTTAGAGTTGGGAACCTATGAACATTCTGTAGGGGCCA12070.15707882832468337No Hit
GGGCTGGATGACTTGGGATGGGGAGAGAGACCCCTCCCCTGGGATCCTGC11910.15499659033529237No Hit
GTACGGGAGCTTCAGCTGTGGTAGAGAAGACAGGATTCAGGACAATCTCCAGCATGGCCGGCTTCCCTCTCCTC11730.1526540725972275No Hit
TCCCTCTCCTCCTCACCCTCCTCACTCACTGTGCAGGGTCCTGGGCCCAG11720.15252393272289058No Hit
GTTTGGGGGCCATTCCTGGGAGTTGCTGGTACCAATGTGCATAATTACTT11690.15213351309987974No Hit
TTCCTGGGAGTTGCTGGTACCAATGTGCATAATTACTTCCGATGTTGGAGCTGCTTCCAGAACAAGAGATGATGA11640.15148281372819508No Hit
GTGTATTACTGTGCGAGAGGTCTAGGATATTGTGGGAGGACCAGGTGTTACGAGATCTTCGGGGACGTCTGGGGC11630.15135267385385812No Hit
CTGTCACAGCTCCCGGGTAGAAGTCACTGATCAGACACACTAGTGTGGCC11520.1499211352361518No Hit
CTTCAGCTGTGGTAGAGAAGACAGGATTCAGGACAATCTCCAGCATGGCCGGCTTCCCTCTCCTCCTCACCCTC11360.1478388972467608No Hit
CAGTCTGAGTGGTCCAATCTTCGGGACTGGGACCAAGGTCACCGTCCTAGGTCAGCCCAAGGCCAACCCCA11330.14744847762375002No Hit
CTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTG11280.14679777825206533No Hit
TTCCAGGCCACTGTCACAGCTCCCGGGTAGAAGTCACTGATCAGACACACTAGTGTGGCCTTGTTGGCTTGGAG11150.14510595988568512No Hit
GTCACAGCTCCCGGGTAGAAGTCACTGATCAGACACACTAGTGTGGCCTT11050.14380456114231577No Hit
CCCCTGGGATCCTGCAGCTCCAGGCTCCCGTGGGTGGGGTTAGAGTTGGG11030.1435442813936419No Hit
GGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCC10990.14302372189629414No Hit
GGGTCATCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTAT10820.1408113440325662No Hit
GGACAATCTCCAGCATGGCCGGCTTCCCTCTCCTCCTCACCCTCCTCACTCACTGTGCAGGGTCCTGGGCCCAGT10820.1408113440325662No Hit
GCATGGGATGACAGTCTGAGTGGTCCAATCTTCGGGACTGGGACCAAGGT10700.13924966554052295No Hit
GTACCAATGTGCATAATTACTTCCGATGTTGGAGCTGCTTCCAGAACAAGAGATGATGACCCTCTGCCCGGGGGT10690.13911952566618602No Hit
AGATTGGACCACTCAGACTGTCATCCCATGCTGCACAATAATAGTCAGCC10650.13859896616883827No Hit
GACTTCCACTGCTCGGGCGTCAGGCTCAGGTAGCTGCTGGCCGCGTACTT10580.1376879870484797No Hit
GTAGAGAAGACAGGATTCAGGACAATCTCCAGCATGGCCGGCTTCCCTCT10550.1372975674254689No Hit
CTCCACTCCCGCCTTGACGGGGCTGCCATCTGCCTTCCAGGCCACTGTCACAGCTCCCGGGTAGAAGTCACTGAT10520.13690714780245808No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT10500.1366468680537842No Hit
CCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAGGTCTGGCACCTCAG10420.1356057490590887No Hit
GGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCA10380.13508518956174095No Hit
GGGCTGCCATCTGCCTTCCAGGCCACTGTCACAGCTCCCGGGTAGAAGTCACTGATCAGACACACTAGTGTGGC10300.13404407056704545No Hit
GGATTCAGGACAATCTCCAGCATGGCCGGCTTCCCTCTCCTCCTCACCCT10290.13391393069270852No Hit
GGTATCAACGCAGAGTACGGGAGCTTCAGCTGTGGTAGAGAAGACAGGATTCAGGACAATCTCCAGCATGGCCGG10270.13365365094403464No Hit
GTCCGAGGATGAGGCTGACTATTATTGTGCAGCATGGGATGACAGTCTGAGTGGTCCAATCTTCGGGACTGGGAC10260.1335235110696977No Hit
GTCTGCGCTGACTCAGCCACCCTCAGTGTCGGGGACCCCCGGGCAGAGGGTCATCATCTCTTGTTCTGGAAGCAG10140.13196183257765448No Hit
GGGATGGGGAGAGAGACCCCTCCCCTGGGATCCTGCAGCTCCAGGCTCCCGTGGGTGGGGTTAGAGTTGGGAAC10110.13157141295464364No Hit
GCTGTGGTAGAGAAGACAGGATTCAGGACAATCTCCAGCATGGCCGGCTTCCCTCTCCTCCTCACCCTCCTCACT10080.13118099333163286No Hit
GTCAGGGACCCCTGAGGGGCGCTTATTATTCCTATCCATGAGGAGTTTGGGGGCCATTCCTGGGAGTTGCTGGTA10050.13079057370862202No Hit
GGGGAGAGAGACCCCTCCCCTGGGATCCTGCAGCTCCAGGCTCCCGTGGG10040.1306604338342851No Hit
GGATATTTATTGGGGTTTCATGAGTGCAGGGAGAAGGGCTGGATGACTTGGGATGGGGAGAGAGACCCCTCCC10010.13027001421127427No Hit
CTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCG9950.12948917496525264No Hit
CTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGG9940.12935903509091573No Hit
GTGTATCGGCCCTTCACGGAGTCTCCATAGTATTTTTCACTTCCATCAAACCATATAACTGCCACCCACTCCAGC9840.12805763634754633No Hit
GATCAGACACACTAGTGTGGCCTTGTTGGCTTGGAGCTCCTCAGAGGAGG9660.12571511860948148No Hit
AGTCTGCGCTGACTCAGCCACCCTCAGTGTCGGGGACCCCCGGGCAGAGG9640.1254548388608076No Hit
GGTAGCTGCTGGCCGCGTACTTGTTGTTGCTCTGTTTGGAGGGTTTGGTGGTCTCCACTCCCGCCTTGACGGGG9640.1254548388608076No Hit
GCACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGGTTTTC9640.1254548388608076No Hit
GTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATG9600.12493427936345984No Hit
GGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTT9600.12493427936345984No Hit
ATAATAGTCAGCCTCATCCTCGGACCGGAGCCCACTGATGGCCAGGGAGG9580.12467399961478597No Hit
GGGCGGGAACAGAGTGACAGTGGGGTTGGCCTTGGGCTGACCTAGGACGG9510.12376302049442742No Hit
CCCCCGGGCAGAGGGTCATCATCTCTTGTTCTGGAAGCAGCTCCAACATC9460.12311232112274273No Hit
CTCCCAGGAATGGCCCCCAAACTCCTCATGGATAGGAATAATAAGCGCCCCTCAGGGGTCCCTGACCGATTCT9420.12259176162539498No Hit
TGGGATGACAGTCTGAGTGGTCCAATCTTCGGGACTGGGACCAAGGTCACCGTCCTAGGTCAGCCCAAGGCCAAC9320.1212903628820256No Hit
CCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTAC9240.1202492438873301No Hit
TCCTCACCCTCCTCACTCACTGTGCAGGGTCCTGGGCCCAGTCTGCGCTGACTCAGCCACCCTCAGTGTCGGGGA9200.11972868438998235No Hit
CCACTAGAAGTCGGCGGTGTTTCCATTCGGTGATCAGCACTGAACACAGA9120.11868756539528687No Hit
GAATAATAAGCGCCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAGGTCTGGCACCTCAGCCTCCCTGGCCAT9050.11777658627492829No Hit
GGCCCAGTCTGCGCTGACTCAGCCACCCTCAGTGTCGGGGACCCCCGGGC9030.11751630652625442No Hit
CTGCAGCTCCAGGCTCCCGTGGGTGGGGTTAGAGTTGGGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTC8960.11660532740589585No Hit
GTCGGGGACCCCCGGGCAGAGGGTCATCATCTCTTGTTCTGGAAGCAGCT8940.11634504765722198No Hit
GCGCTGACTCAGCCACCCTCAGTGTCGGGGACCCCCGGGCAGAGGGTCAT8850.11517378878818955No Hit
GCCACCCTCAGTGTCGGGGACCCCCGGGCAGAGGGTCATCATCTCTTGTT8730.1136121102961463No Hit
GAGCAACAACAAGTACGCGGCCAGCAGCTACCTGAGCCTGACGCCCGAGCAGTGGAAGTCCCACAGAAGCTACAG8720.11348197042180935No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8700.11322169067313548No Hit
CTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTG8650.1125709913014508No Hit
CTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGCACATTGGTACCAGCAACTCCCAGGAATGGCCCC8610.11205043180410304No Hit
GGGTAGAAGTCACTGATCAGACACACTAGTGTGGCCTTGTTGGCTTGGAG8540.11113945268374449No Hit
ACCTGAGCCTGACGCCCGAGCAGTGGAAGTCCCACAGAAGCTACAGCTGC8530.11100931280940754No Hit
CTCAGACTGTCATCCCATGCTGCACAATAATAGTCAGCCTCATCCTCGGA8460.11009833368904899No Hit
CCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTACCTGAGCCT8450.10996819381471204No Hit
GACACACTAGTGTGGCCTTGTTGGCTTGGAGCTCCTCAGAGGAGGGCGGG8380.10905721469435349No Hit
GTCCCTGACCGATTCTCTGGCTCCAGGTCTGGCACCTCAGCCTCCCTGGC8310.10814623557399493No Hit
GAGTTGGGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAG8260.10749553620231025No Hit
ATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACC8220.1069749767049625No Hit
GCTCGGGCGTCAGGCTCAGGTAGCTGCTGGCCGCGTACTTGTTGTTGCTCTGTTTGGAGGGTTTGGTGGTCTCCA8220.1069749767049625No Hit
GTCATCCCATGCTGCACAATAATAGTCAGCCTCATCCTCGGACCGGAGCC8180.10645441720761473No Hit
GCCATCTGCCTTCCAGGCCACTGTCACAGCTCCCGGGTAGAAGTCACTGA8120.10567357796159312No Hit
CTGTCATCCCATGCTGCACAATAATAGTCAGCCTCATCCTCGGACCGGAG7970.10372147984653907No Hit
CTTCGGGACTGGGACCAAGGTCACCGTCCTAGGTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTC7960.10359133997220211No Hit
GGAGTGGAGACCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGC7960.10359133997220211No Hit
GTCCCGAAGATTGGACCACTCAGACTGTCATCCCATGCTGCACAATAATAGTCAGCCTCATCCTCGGACCGGAGC7840.10202966148015888No Hit
TTGTTGCTCTGTTTGGAGGGTTTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCCATCTGCCTTCCAGGCCA7840.10202966148015888No Hit
GTGGAAGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCA7830.10189952160582194No Hit
CTTATTATTCCTATCCATGAGGAGTTTGGGGGCCATTCCTGGGAGTTGCT7810.10163924185714807No Hit
GTATGTAGACGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC7730.10059812286245255No Hit
GGTTAGAGTTGGGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGAC7700.10020770323944175No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATATAAG150.002347473369.057551
TGGTATC1750.061.101472
GTGGTAT1800.057.5479551
ATAAACG252.5892217E-455.1022344
GTATAAA200.007364208351.739152
AAATAGC200.00737940351.71218530
CTTAGGA306.316659E-445.9903562
GGTATCA5450.044.348881
GTATCAA15250.043.6987081
GCTTGAC758.6401997E-1041.434531
TATCAAC16600.040.518612
TATAAAC350.001356291739.3766753
GCTTGTC901.2187229E-1038.3653031
ATCAACG18300.036.9021843
TCAACGC18500.036.4866144
CAACGCA19100.035.338145
AACGCAG19250.035.241676
GCTTGTA501.851748E-434.528771
TACGGGT807.204653E-834.43665315
CGCAGAG20000.033.92018