FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005755759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005755759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1261997
Sequences flagged as poor quality0
Sequence length20-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC22500.17828885488634283No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT16240.12868493348240923No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG15850.12559459333104595No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTCTAGTCTCC13590.10768646835135107No Hit
GCCTTGGGCTGACCTAGGACGGTCAGTTTGGTCCCTCCGCCGAATACCAGAAAAGTGTTGGTGCCCGCATATGAG13540.10729027089604809No Hit
GACCTAGGACGGTCAGTTTGGTCCCTCCGCCGAATACCAGAAAAGTGTTG13360.10586396005695736No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)