FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005755832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005755832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences786974
Sequences flagged as poor quality0
Sequence length20-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTGTGCTGGTCATTAATCAAGATAACAAGCGGCCCTCAGGGATCCCT10640.13520141707349925No Hit
CCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACA9510.1208426199594904No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC9330.1185553779413297No Hit
GCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACACCCA9240.11741175693224935No Hit
GACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACACCCAAAGGCTGGTGTCCCATGCCTGACAGTAATAGTCAG9190.1167764119272047No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT8960.11385382490399937No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8710.11067709987877616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)