EGAF00005755917 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005755917
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	478148
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	733	0.15329981512000468	No Hit
GAGTTACACTACCCTCCGGACGTTCGGCCAAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCAT	690	0.14430678367367425	No Hit
GTGTAACTCTGTTGACAATAGTAAGTTGCAGAATCTTCAGGTTGCAGATTGTTGATGGAGAGAGTGAAATCTGTC	569	0.11900081146423284	No Hit
GTCCTGTGTAGCCTCTGGATTCACCTTTAGTAGCCATTGGATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGG	555	0.11607284773752059	No Hit
GTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGG	553	0.11565456720513315	No Hit
GTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCCCTCCAGCAGCTTGGGCACCCAGAC	527	0.11021692028409613	No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT	525	0.10979863975170867	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	523	0.10938035921932122	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	511	0.10687067602499645	No Hit
GTACAACAGCACGTACCGTGTGGTCAGCGTCCTCACCGTCCTGCACCAGG	510	0.1066615357588027	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	495	0.10352443176589675	No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT	485	0.10143302910395945	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	205	0.0	48.797703	1
TTACTCG	35	0.0013493901	39.414528	19
TTAACGG	45	9.8988734E-5	38.404022	35
TTTAACG	50	1.8408986E-4	34.56	34
ATCAACG	1735	0.0	33.600246	3
TCAACGC	1750	0.0	33.312244	4
AACGCAG	1795	0.0	32.66929	6
CAACGCA	1805	0.0	32.297188	5
GTATCAA	1860	0.0	31.713076	1
CTAACCG	55	3.0831282E-4	31.653706	52
CGCGGTA	55	3.162254E-4	31.51727	43
TAACGGC	55	3.2093443E-4	31.437948	36
CGCAGAG	2000	0.0	29.486996	8
ACGCAGA	2005	0.0	29.241451	7
CGTGCAA	60	5.07959E-4	29.068077	57
TAACCGT	60	5.1332987E-4	29.015902	53
AGAGTAC	2010	0.0	28.99713	11
GCTTGCG	50	0.0068868287	28.261082	66
GCAGAGT	2100	0.0	27.918625	9
CAGAGTA	2110	0.0	27.786306	10