EGAF00005755918 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005755918
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	478148
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	716	0.14974443059471126	No Hit
GAGTTACACTACCCTCCGGACGTTCGGCCAAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCAT	653	0.1365685938245062	No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT	647	0.13531375222734385	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	630	0.1317583677020504	No Hit
GTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGG	567	0.11858253093184536	No Hit
GTCCTGTGTAGCCTCTGGATTCACCTTTAGTAGCCATTGGATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGG	543	0.11356316454319583	No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT	486	0.10164216937015318	No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT	480	0.10038732777299078	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGTAG	15	0.0023618585	68.947205	31
GTGGTAT	175	0.0	45.355675	1
ACGGGAC	80	1.6643753E-9	38.746277	16
GTATCAA	1950	0.0	36.279484	1
TCAACGC	1930	0.0	35.880013	4
CAACGCA	1955	0.0	35.567627	5
ATCAACG	1955	0.0	35.45088	3
AACGCAG	2000	0.0	35.107918	6
TAGGACC	60	1.3537692E-5	34.45195	4
CGCAGAG	2160	0.0	32.188633	8
ACGCAGA	2200	0.0	31.759836	7
AGAGTAC	2185	0.0	31.662811	11
CAGAGTA	2265	0.0	30.696442	10
CTGTCGC	45	0.0046730977	30.595133	9
GCAGAGT	2275	0.0	30.41022	9
TATCAAC	2370	0.0	29.69214	2
TTCGGGG	310	0.0	29.299154	70
GGTATCA	895	0.0	28.533203	1
AGTACGG	1565	0.0	28.374332	13
TCGGTCA	50	0.0077991365	27.550028	14