EGAF00005756132 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005756132
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	801185
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	1626	0.20294938122905445	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1349	0.16837559365190313	No Hit
GTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATT	1113	0.1389192258966406	No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT	1062	0.13255365489868132	No Hit
GTTAGGACCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCA	943	0.11770065590344303	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	912	0.11383138725762465	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	891	0.11121026978787671	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	888	0.11083582443505557	No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT	834	0.10409580808427515	No Hit
GTGCAGCCACAGTTCGTTTGATCTCCACCTTGGTCCCTCCGCCGAAAGTG	830	0.10359654761384698	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	1215	0.0	40.204494	1
GTATCAA	2930	0.0	39.331432	1
TATCAAC	3360	0.0	34.564	2
TCAACGC	3475	0.0	32.594513	4
ATCAACG	3520	0.0	32.297512	3
CAACGCA	3580	0.0	31.63063	5
GTGGTAT	610	0.0	31.016685	1
AACGCAG	3715	0.0	30.573566	6
TGGTATC	620	0.0	28.263441	2
ACGCAGA	4040	0.0	28.029125	7
CGCAGAG	4075	0.0	27.788382	8
AGAGTAC	4200	0.0	27.369854	11
GCAGAGT	4270	0.0	26.519358	9
GTCTAGT	105	7.874969E-7	26.209772	1
CAGAGTA	4380	0.0	26.166721	10
AGTACGG	2765	0.0	24.44979	13
GAGTACG	2795	0.0	24.307106	12
ACGGGAT	305	0.0	23.630762	16
CTAGACT	90	2.2009124E-4	22.882008	4
TCGACGT	170	3.588866E-9	22.735598	60