FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005756140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005756140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1510248
Sequences flagged as poor quality0
Sequence length20-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT37130.2458536611205577No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30010.1987090861898178No Hit
GTTAGGACCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCA27460.1818244420783871No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT24750.16388036931682745No Hit
GTCTGGGACAGACTTCACTCTCACCATCAGTCCCCTAGAGCCTGAAGATG24080.15944401184441231No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC23820.1577224402879527No Hit
CTCCTGCAGGGCCAGTCAGAGTGTTCGCAGCCTCATCGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCCGGCT23000.15229286845604165No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG22910.1516969398403441No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC22380.14818758243679184No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT21680.1435525820924775No Hit
GTGCAGCCACAGTTCGCTTGATCTCCACCTTGGTCCCTCCGCCGAAAGTGAGTCTTGGCCAGTTGTTACGCTG20400.13507715289144565No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT20150.1334217956256191No Hit
GTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCGCCCTCTCCTGCAGGGCCAGTCAGAGTGTTCGCAG19800.13110429545346194No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC18760.12421800922762354No Hit
GTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGC17710.11726550871115207No Hit
GCGTCAGGGTGCTGCTGAGGCTGTAGGTGCTGTCCTTGCTGTCCTGCTCT17600.11653715151418839No Hit
GTCCCCTAGAGCCTGAAGATGTTGCAGTTTATTACTGTCAGCAGCGTAAC17220.11402100847013207No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC17160.11362372272633368No Hit
GGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTT17150.11355750843570062No Hit
GTAATACACAGCCGTGTCCTCGGCTCTCAGGCTGTTCATTTCTAGATACA16910.11196836546050716No Hit
GTCCCAGACCCACTGCCACTGAACCTGTCTGGGATGCCAGTGGCCCTGTT16830.11143865113544267No Hit
GAGCAGGACAGCAAGGACAGCACCTACAGCCTCAGCAGCACCCTGACGCT15580.10316186480630996No Hit
GCGTAACAACTGGCCAAGACTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAGCGAACTGTGGCTGCACCAT15460.10236729331871322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)