Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005756315 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1360804 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-76 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1934 | 0.14212186325143078 | No Hit |
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT | 1770 | 0.13007016440280894 | No Hit |
GTAATAGACCGCCGTGTCATCGGCTCTCAGTCTGTTCATTTGCAGATACA | 1578 | 0.11596085843369067 | No Hit |
GTTAGGACCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCA | 1538 | 0.11302141969012436 | No Hit |
GGTGTATACTACGGAGCCTCTGTGAAGGGCCGTTTCACCAGCTCCAGGGACAACGCCAAGAACTCAGTGTATCTG | 1420 | 0.10435007539660378 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1875 | 0.0 | 45.766487 | 1 |
GTATCAA | 4845 | 0.0 | 40.473244 | 1 |
TATCAAC | 5600 | 0.0 | 35.202496 | 2 |
ATCAACG | 5945 | 0.0 | 33.101658 | 3 |
TCAACGC | 5995 | 0.0 | 32.82558 | 4 |
CAACGCA | 6110 | 0.0 | 32.20775 | 5 |
CGCTCGG | 100 | 2.8679674E-4 | 32.049385 | 70 |
AACGCAG | 6150 | 0.0 | 31.94223 | 6 |
ACGCAGA | 6690 | 0.0 | 29.46155 | 7 |
CGCAGAG | 6795 | 0.0 | 29.158428 | 8 |
GCAGAGT | 7110 | 0.0 | 27.76865 | 9 |
TGGTATC | 720 | 0.0 | 27.762653 | 2 |
CGCGATT | 50 | 0.007783306 | 27.56511 | 12 |
CAGAGTA | 7190 | 0.0 | 27.45968 | 10 |
AGAGTAC | 7485 | 0.0 | 26.469501 | 11 |
AGTACGG | 4750 | 0.0 | 25.098759 | 13 |
GAGTACG | 4800 | 0.0 | 24.837313 | 12 |
GCGTTGT | 625 | 0.0 | 24.661432 | 62 |
GTGGTAT | 825 | 0.0 | 24.646065 | 1 |
CGTTGTC | 685 | 0.0 | 23.04369 | 63 |