EGAF00005756339 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005756339
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	960082
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	1317	0.13717578290187712	No Hit
GTAATAGACCGCCGTGTCATCGGCTCTCAGTCTGTTCATTTGCAGATACA	1277	0.13300947210759081	No Hit
GGTGTATACTACGGAGCCTCTGTGAAGGGCCGTTTCACCAGCTCCAGGGACAACGCCAAGAACTCAGTGTATCTG	1226	0.12769742584487576	No Hit
GTCTATTACTGTGTGAGAGATGGCGCCTTCGGATATAGTGGCTACGATCGTGAAGAGTACTGGGGCCAGGGAACC	1216	0.12665584814630415	No Hit
AGCCTGGAGAGTCCCTGACACTCTCCTGTGTAGCCTCTGGATTCACCTTC	1021	0.10634508302415835	No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT	1002	0.10436608539687235	No Hit
GTTAGGACCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCA	1002	0.10436608539687235	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	1210	0.0	45.017105	1
GTATCAA	3005	0.0	40.498234	1
TATCAAC	3315	0.0	36.815063	2
ACCGTAC	90	5.2223186E-9	34.47692	27
ATCAACG	3595	0.0	34.235382	3
TCAACGC	3580	0.0	34.18623	4
CAACGCA	3685	0.0	33.212128	5
AACGCAG	3745	0.0	32.772083	6
GACCGTA	95	8.85484E-9	32.660645	26
TCGTATG	90	1.9466643E-7	30.75189	40
ACGCAGA	4065	0.0	30.184378	7
CGCAGAG	4070	0.0	30.147295	8
GTGGTAT	475	0.0	29.757475	1
CAGAGTA	4175	0.0	29.471653	10
TTCGGGG	575	0.0	29.291473	70
GCAGAGT	4290	0.0	28.601278	9
ACTAGAT	125	4.138201E-9	27.607426	32
CGTACTA	125	4.1618478E-9	27.593037	29
AATAGCG	90	6.1332194E-6	27.24546	62
AGAGTAC	4520	0.0	27.145905	11