EGAF00005756386 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005756386
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1553933
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCTGCACTGGGAGCGGCGCCAACATCGGGGCAGGTTATGATGTACATTGGTACCAGCAACTTCCAGGAGCAGC	3432	0.2208589430818446	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2744	0.17658418992324637	No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC	2404	0.1547042246995205	No Hit
GTCCTGGGCCCAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGTGGCCCCAGGGCAGAGGGTCACCATCTCCTG	2158	0.13887342633176591	No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG	2060	0.1325668481202214	No Hit
GCCTTGGGCTGACCTAAGACGGTCAGCTTGGTCCCTCCGCCGAACACCACACTACTCAGGGTGTTGTCGTAGGA	2059	0.1325024952813281	No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT	1850	0.11905275195262602	No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTCTAGTCTCC	1679	0.10804841650186978	No Hit
GTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCAGGCGTCAGGCTCAGATAG	1655	0.1065039483684303	No Hit
CTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCAGGCGTCAGGCTCAGATAGCTGCTGG	1578	0.10154877977364533	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	1065	46.22513	1
TGGTATC	1115	42.885403	2
GGTATCA	3110	42.396507	1
GTATCAA	7405	39.191708	1
TATCAAC	8165	35.30672	2
ATCAACG	8610	33.498123	3
TCAACGC	8645	33.377533	4
AACGCAG	9070	31.838087	6
CAACGCA	9115	31.682943	5
ACGCAGA	9675	29.882668	7
CGCAGAG	9815	29.491407	8
AGAGTAC	9915	28.985247	11
CAGAGTA	10040	28.795368	10
GCAGAGT	10355	27.953468	9
AGTACGG	6630	25.585014	13
GAGTACG	6755	25.415749	12
TACGGGA	2695	23.958254	15
GAGTACT	4975	23.259214	12
AGTACTT	5010	23.02893	13
GTACGGG	7435	22.448298	14