FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005756419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005756419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1572013
Sequences flagged as poor quality0
Sequence length20-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT20520.13053327167141748No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20480.1302788208494459No Hit
ATCTACTACAGTGGGGACACCAACTACAATCCGTCCCTCGAGAATCGAGC18150.11545706046960172No Hit
GTCCCACTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGG17180.10928662803679104No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC15990.10171671608313672No Hit
GTACAACAGCACGTACCGTGTGGTCAGCGTCCTCACCGTCCTGCACCAGG15770.10031723656229306No Hit
CATCTATTCTGCTTCCAGTTTACAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCA15730.10006278574032149No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)