EGAF00005756430 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005756430
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2546571
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

$Per sequence GC content graph$

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	4123	0.1619039877545138	No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC	3957	0.1553854182742205	No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG	3597	0.14124876156997	No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGG	3351	0.13158871282206544	No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT	3345	0.13135310187699462	No Hit
GTCCTGGGCCCAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTG	2837	0.11140470852766327	No Hit
GCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAATAGCACGGCACTCAGGCTGCTATCCCATGTT	2836	0.11136544003681813	No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTCTAGTCTCC	2831	0.11116909758259244	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	1430	42.371838	1
GGTATCA	4165	41.163757	1
GTATCAA	10035	39.487408	1
TGGTATC	1670	35.847588	2
TATCAAC	11180	35.236343	2
TCAACGC	11965	32.960888	4
ATCAACG	12030	32.805996	3
CAACGCA	12250	32.29036	5
AACGCAG	12450	31.881332	6
ACGCAGA	13510	29.37991	7
CGCAGAG	13455	29.372412	8
AGAGTAC	13475	29.175358	11
CAGAGTA	13735	28.648634	10
GCAGAGT	13990	28.273705	9
AGTACGG	9545	24.859518	13
GAGTACG	9795	24.222647	12
GAGTACT	6505	23.911062	12
GTCTACT	895	23.079634	1
AGTACTT	6755	22.825045	13
GTACTTT	6765	22.694237	14