FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005756434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005756434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2520533
Sequences flagged as poor quality0
Sequence length20-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60100.23844163119467193No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT55820.22146109572856215No Hit
GTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGG41520.16472706368057866No Hit
GTTACAATACCCTCCGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAA39300.15591940276124136No Hit
GTATTGTAACTCTGTTGACAGTAGTAAGTTGCAGAATCTTCAGGTTGCAG37090.14715141599018938No Hit
CATCTATGCTGCATCCAGTTTACAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTAGATCTGGGACGGATTTCA36170.14350139434794149No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT35630.14135899034053512No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC34380.13639972180487223No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC34370.1363600476565869No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG33470.13278937431090962No Hit
GTGCAGCCACAGTTCGTTTGATTTCCACCTTGGTCCCTTGGCCGAACGTC32170.12763173503382025No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT29380.11656264766222064No Hit
GTCGGAGACAGAGTCACCATCTCTTGCCGGGCAAGTCAGACCATTAATAGCTATTTAAATTGGTATCAACAGAAA28500.11307132261311396No Hit
ACTTACTACTGTCAACAGAGTTACAATACCCTCCGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAA27700.1098973907502897No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC27690.10985771660200441No Hit
GTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGC27480.10902455948801305No Hit
GTCTCCATCCTCCCTGTCTGCATCTGTCGGAGACAGAGTCACCATCTCTTGCCGGGCAAGTCAGACCATTAATAG26990.1070805262220332No Hit
GAGTTACAATACCCTCCGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCAT25730.102081583538085No Hit
GGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCT25720.1020419093897997No Hit
GCGTCAGGGTGCTGCTGAGGCTGTAGGTGCTGTCCTTGCTGTCCTGCTCT25500.10116907812752303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)